miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14264 5' -58.2 NC_003521.1 + 21521 1.06 0.003567
Target:  5'- cUGCCUGCCCAACACGCUGGCCUUCAUg -3'
miRNA:   3'- -ACGGACGGGUUGUGCGACCGGAAGUA- -5'
14264 5' -58.2 NC_003521.1 + 223648 0.79 0.238527
Target:  5'- cGCCUGCCCAGCugccaGCGCUGcGCCU-CGg -3'
miRNA:   3'- aCGGACGGGUUG-----UGCGAC-CGGAaGUa -5'
14264 5' -58.2 NC_003521.1 + 16073 0.77 0.300852
Target:  5'- cUGCCggaGcCCCGACGCGCUGGCCgccugcgUCGg -3'
miRNA:   3'- -ACGGa--C-GGGUUGUGCGACCGGa------AGUa -5'
14264 5' -58.2 NC_003521.1 + 127032 0.77 0.307733
Target:  5'- cGCCgcggUGCCCGuCGCGCUGGCCgUCGc -3'
miRNA:   3'- aCGG----ACGGGUuGUGCGACCGGaAGUa -5'
14264 5' -58.2 NC_003521.1 + 116781 0.76 0.321853
Target:  5'- cGCC-GCCgCGGCACGCUGGCCgUCu- -3'
miRNA:   3'- aCGGaCGG-GUUGUGCGACCGGaAGua -5'
14264 5' -58.2 NC_003521.1 + 118316 0.76 0.351527
Target:  5'- gGCCUGCCCGccgcCGCGUUGGCCcugCAg -3'
miRNA:   3'- aCGGACGGGUu---GUGCGACCGGaa-GUa -5'
14264 5' -58.2 NC_003521.1 + 114467 0.75 0.383091
Target:  5'- aGCCUgGCCCucUACGUggUGGCCUUCAUc -3'
miRNA:   3'- aCGGA-CGGGuuGUGCG--ACCGGAAGUA- -5'
14264 5' -58.2 NC_003521.1 + 75040 0.74 0.407969
Target:  5'- gGCa-GCgCCAGCGgGCUGGCCUUCGg -3'
miRNA:   3'- aCGgaCG-GGUUGUgCGACCGGAAGUa -5'
14264 5' -58.2 NC_003521.1 + 100971 0.74 0.433833
Target:  5'- cGCCgUGCCCGGCGCGCacGGCgUUCu- -3'
miRNA:   3'- aCGG-ACGGGUUGUGCGa-CCGgAAGua -5'
14264 5' -58.2 NC_003521.1 + 187617 0.73 0.482674
Target:  5'- gGCCUGCCgGGCGagccgggccgcgcgcCGCUGGCCaucUUCAUc -3'
miRNA:   3'- aCGGACGGgUUGU---------------GCGACCGG---AAGUA- -5'
14264 5' -58.2 NC_003521.1 + 25670 0.73 0.50712
Target:  5'- gUGCUgGUCCacguccugGugACGCUGGCCUUCGUg -3'
miRNA:   3'- -ACGGaCGGG--------UugUGCGACCGGAAGUA- -5'
14264 5' -58.2 NC_003521.1 + 18432 0.73 0.50712
Target:  5'- gGCCUGCUCAagACGCGC-GGCCUg--- -3'
miRNA:   3'- aCGGACGGGU--UGUGCGaCCGGAagua -5'
14264 5' -58.2 NC_003521.1 + 143712 0.72 0.526276
Target:  5'- cGCCgcGCCUucuGCACGCUGGCCgacgccaUCAa -3'
miRNA:   3'- aCGGa-CGGGu--UGUGCGACCGGa------AGUa -5'
14264 5' -58.2 NC_003521.1 + 139600 0.72 0.526276
Target:  5'- cGCCgcgGCaCCAggaACACGgUGGCCUUCu- -3'
miRNA:   3'- aCGGa--CG-GGU---UGUGCgACCGGAAGua -5'
14264 5' -58.2 NC_003521.1 + 116979 0.72 0.545699
Target:  5'- cGCCUGCCCAagcugcgcuacgACAagcaGCUGGUCggCGUg -3'
miRNA:   3'- aCGGACGGGU------------UGUg---CGACCGGaaGUA- -5'
14264 5' -58.2 NC_003521.1 + 35124 0.72 0.545699
Target:  5'- cGuCCUGUCCAuguuCAUGCUGGCCUa--- -3'
miRNA:   3'- aC-GGACGGGUu---GUGCGACCGGAagua -5'
14264 5' -58.2 NC_003521.1 + 163839 0.72 0.552552
Target:  5'- gUGCCUGCCCAucgccgccagcaucACGCGCaucGGCCgcgaCAUg -3'
miRNA:   3'- -ACGGACGGGU--------------UGUGCGa--CCGGaa--GUA- -5'
14264 5' -58.2 NC_003521.1 + 16187 0.72 0.555497
Target:  5'- cUGCCUGUCCGAgu-GCUGGcCCUUCGa -3'
miRNA:   3'- -ACGGACGGGUUgugCGACC-GGAAGUa -5'
14264 5' -58.2 NC_003521.1 + 112978 0.71 0.585172
Target:  5'- -aCCUGCCCGACGgGCUGGCg----- -3'
miRNA:   3'- acGGACGGGUUGUgCGACCGgaagua -5'
14264 5' -58.2 NC_003521.1 + 33061 0.71 0.585172
Target:  5'- aUGCC-GCCCAGCGgGUccaugaagaUGGCCUUCu- -3'
miRNA:   3'- -ACGGaCGGGUUGUgCG---------ACCGGAAGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.