miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14264 5' -58.2 NC_003521.1 + 191781 0.69 0.734028
Target:  5'- cGCCUGCCCGACcuUGCc-GUCUUCGUc -3'
miRNA:   3'- aCGGACGGGUUGu-GCGacCGGAAGUA- -5'
14264 5' -58.2 NC_003521.1 + 129992 0.7 0.679179
Target:  5'- cUGCCgcUGCgCCGGCGgcggcgcgcaacggcCGCUGGCUUUCAg -3'
miRNA:   3'- -ACGG--ACG-GGUUGU---------------GCGACCGGAAGUa -5'
14264 5' -58.2 NC_003521.1 + 104421 0.69 0.685138
Target:  5'- cUGUCUGCCUcACACGC-GGCCcgCGg -3'
miRNA:   3'- -ACGGACGGGuUGUGCGaCCGGaaGUa -5'
14264 5' -58.2 NC_003521.1 + 34145 0.69 0.685138
Target:  5'- gGCCagGCCCAcgcGCACGaaGGCCUUgAg -3'
miRNA:   3'- aCGGa-CGGGU---UGUGCgaCCGGAAgUa -5'
14264 5' -58.2 NC_003521.1 + 75066 0.69 0.695034
Target:  5'- -uCCUGCCCAccGCcuccgACGCcauggUGGCCUUCAUc -3'
miRNA:   3'- acGGACGGGU--UG-----UGCG-----ACCGGAAGUA- -5'
14264 5' -58.2 NC_003521.1 + 104062 0.69 0.714666
Target:  5'- cGUCUGCgCCAGCACGUUGGUg----- -3'
miRNA:   3'- aCGGACG-GGUUGUGCGACCGgaagua -5'
14264 5' -58.2 NC_003521.1 + 74185 0.69 0.724386
Target:  5'- cGCCgcggcGCCCGGCGCGC-GGCCc---- -3'
miRNA:   3'- aCGGa----CGGGUUGUGCGaCCGGaagua -5'
14264 5' -58.2 NC_003521.1 + 239839 0.69 0.724386
Target:  5'- gGCCgGCCCAGCGggagcagacCGCcGGCCUcUCGUu -3'
miRNA:   3'- aCGGaCGGGUUGU---------GCGaCCGGA-AGUA- -5'
14264 5' -58.2 NC_003521.1 + 36181 0.69 0.734028
Target:  5'- gGCgUGCCCAcGCAC-CUGGCCgagCGg -3'
miRNA:   3'- aCGgACGGGU-UGUGcGACCGGaa-GUa -5'
14264 5' -58.2 NC_003521.1 + 149050 0.7 0.655229
Target:  5'- gGCCgUGCCC---GCGCUGGgCUUCGa -3'
miRNA:   3'- aCGG-ACGGGuugUGCGACCgGAAGUa -5'
14264 5' -58.2 NC_003521.1 + 165377 0.7 0.625161
Target:  5'- gUGCgUGUCCAgguACGCGUUGGCCagCAc -3'
miRNA:   3'- -ACGgACGGGU---UGUGCGACCGGaaGUa -5'
14264 5' -58.2 NC_003521.1 + 33061 0.71 0.585172
Target:  5'- aUGCC-GCCCAGCGgGUccaugaagaUGGCCUUCu- -3'
miRNA:   3'- -ACGGaCGGGUUGUgCG---------ACCGGAAGua -5'
14264 5' -58.2 NC_003521.1 + 127032 0.77 0.307733
Target:  5'- cGCCgcggUGCCCGuCGCGCUGGCCgUCGc -3'
miRNA:   3'- aCGG----ACGGGUuGUGCGACCGGaAGUa -5'
14264 5' -58.2 NC_003521.1 + 116781 0.76 0.321853
Target:  5'- cGCC-GCCgCGGCACGCUGGCCgUCu- -3'
miRNA:   3'- aCGGaCGG-GUUGUGCGACCGGaAGua -5'
14264 5' -58.2 NC_003521.1 + 118316 0.76 0.351527
Target:  5'- gGCCUGCCCGccgcCGCGUUGGCCcugCAg -3'
miRNA:   3'- aCGGACGGGUu---GUGCGACCGGaa-GUa -5'
14264 5' -58.2 NC_003521.1 + 114467 0.75 0.383091
Target:  5'- aGCCUgGCCCucUACGUggUGGCCUUCAUc -3'
miRNA:   3'- aCGGA-CGGGuuGUGCG--ACCGGAAGUA- -5'
14264 5' -58.2 NC_003521.1 + 100971 0.74 0.433833
Target:  5'- cGCCgUGCCCGGCGCGCacGGCgUUCu- -3'
miRNA:   3'- aCGG-ACGGGUUGUGCGa-CCGgAAGua -5'
14264 5' -58.2 NC_003521.1 + 139600 0.72 0.526276
Target:  5'- cGCCgcgGCaCCAggaACACGgUGGCCUUCu- -3'
miRNA:   3'- aCGGa--CG-GGU---UGUGCgACCGGAAGua -5'
14264 5' -58.2 NC_003521.1 + 143712 0.72 0.526276
Target:  5'- cGCCgcGCCUucuGCACGCUGGCCgacgccaUCAa -3'
miRNA:   3'- aCGGa-CGGGu--UGUGCGACCGGa------AGUa -5'
14264 5' -58.2 NC_003521.1 + 116979 0.72 0.545699
Target:  5'- cGCCUGCCCAagcugcgcuacgACAagcaGCUGGUCggCGUg -3'
miRNA:   3'- aCGGACGGGU------------UGUg---CGACCGGaaGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.