miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14264 5' -58.2 NC_003521.1 + 7608 0.68 0.762413
Target:  5'- aGCCgugugcgaaGCCUAugcuACGCGCUGcGCCUUCu- -3'
miRNA:   3'- aCGGa--------CGGGU----UGUGCGAC-CGGAAGua -5'
14264 5' -58.2 NC_003521.1 + 13982 0.7 0.6752
Target:  5'- gGCCUGCCCGGCGCgGCggcgGGCg----- -3'
miRNA:   3'- aCGGACGGGUUGUG-CGa---CCGgaagua -5'
14264 5' -58.2 NC_003521.1 + 16073 0.77 0.300852
Target:  5'- cUGCCggaGcCCCGACGCGCUGGCCgccugcgUCGg -3'
miRNA:   3'- -ACGGa--C-GGGUUGUGCGACCGGa------AGUa -5'
14264 5' -58.2 NC_003521.1 + 16187 0.72 0.555497
Target:  5'- cUGCCUGUCCGAgu-GCUGGcCCUUCGa -3'
miRNA:   3'- -ACGGACGGGUUgugCGACC-GGAAGUa -5'
14264 5' -58.2 NC_003521.1 + 16416 0.66 0.871066
Target:  5'- cGCCUGgCCGGCGagguguaccgGCUGGCCgaCGa -3'
miRNA:   3'- aCGGACgGGUUGUg---------CGACCGGaaGUa -5'
14264 5' -58.2 NC_003521.1 + 18432 0.73 0.50712
Target:  5'- gGCCUGCUCAagACGCGC-GGCCUg--- -3'
miRNA:   3'- aCGGACGGGU--UGUGCGaCCGGAagua -5'
14264 5' -58.2 NC_003521.1 + 20399 0.7 0.625161
Target:  5'- cGCCgUGCUCGucuuuCA-GCUGGCCUUCAc -3'
miRNA:   3'- aCGG-ACGGGUu----GUgCGACCGGAAGUa -5'
14264 5' -58.2 NC_003521.1 + 21521 1.06 0.003567
Target:  5'- cUGCCUGCCCAACACGCUGGCCUUCAUg -3'
miRNA:   3'- -ACGGACGGGUUGUGCGACCGGAAGUA- -5'
14264 5' -58.2 NC_003521.1 + 24472 0.66 0.848566
Target:  5'- cUGCCUGgCCAGCGCGUgcuggaucuacUGGCgCUaCGa -3'
miRNA:   3'- -ACGGACgGGUUGUGCG-----------ACCG-GAaGUa -5'
14264 5' -58.2 NC_003521.1 + 25670 0.73 0.50712
Target:  5'- gUGCUgGUCCacguccugGugACGCUGGCCUUCGUg -3'
miRNA:   3'- -ACGGaCGGG--------UugUGCGACCGGAAGUA- -5'
14264 5' -58.2 NC_003521.1 + 28526 0.68 0.743587
Target:  5'- cGCCUGCgUgccCAUGCcGGCCUUCGc -3'
miRNA:   3'- aCGGACGgGuu-GUGCGaCCGGAAGUa -5'
14264 5' -58.2 NC_003521.1 + 29374 0.68 0.771665
Target:  5'- gGCCUGcCCCGAC-CGCgaGGCCg---- -3'
miRNA:   3'- aCGGAC-GGGUUGuGCGa-CCGGaagua -5'
14264 5' -58.2 NC_003521.1 + 33061 0.71 0.585172
Target:  5'- aUGCC-GCCCAGCGgGUccaugaagaUGGCCUUCu- -3'
miRNA:   3'- -ACGGaCGGGUUGUgCG---------ACCGGAAGua -5'
14264 5' -58.2 NC_003521.1 + 33129 0.66 0.880942
Target:  5'- gGCCUuCuCCAGCACGCcgaugacgaagccguUGGCCUcgUCGg -3'
miRNA:   3'- aCGGAcG-GGUUGUGCG---------------ACCGGA--AGUa -5'
14264 5' -58.2 NC_003521.1 + 34145 0.69 0.685138
Target:  5'- gGCCagGCCCAcgcGCACGaaGGCCUUgAg -3'
miRNA:   3'- aCGGa-CGGGU---UGUGCgaCCGGAAgUa -5'
14264 5' -58.2 NC_003521.1 + 35124 0.72 0.545699
Target:  5'- cGuCCUGUCCAuguuCAUGCUGGCCUa--- -3'
miRNA:   3'- aC-GGACGGGUu---GUGCGACCGGAagua -5'
14264 5' -58.2 NC_003521.1 + 36181 0.69 0.734028
Target:  5'- gGCgUGCCCAcGCAC-CUGGCCgagCGg -3'
miRNA:   3'- aCGgACGGGU-UGUGcGACCGGaa-GUa -5'
14264 5' -58.2 NC_003521.1 + 36574 0.66 0.863764
Target:  5'- aGCCUcCCCAuGCGCGaaCUGGCCUggCGg -3'
miRNA:   3'- aCGGAcGGGU-UGUGC--GACCGGAa-GUa -5'
14264 5' -58.2 NC_003521.1 + 36939 0.66 0.871066
Target:  5'- cUGCCgucauggGCCCG--ACGCUGGUCgUCGc -3'
miRNA:   3'- -ACGGa------CGGGUugUGCGACCGGaAGUa -5'
14264 5' -58.2 NC_003521.1 + 39446 0.67 0.832613
Target:  5'- gGCCgaGCCCGGCGC-CgagGGCCgcgUCGa -3'
miRNA:   3'- aCGGa-CGGGUUGUGcGa--CCGGa--AGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.