miRNA display CGI


Results 21 - 40 of 286 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 5' -60.5 NC_003521.1 + 146892 0.66 0.853126
Target:  5'- aCGACGGCgGGCaGCGGUagucgCCGCuuGcCGCGa -3'
miRNA:   3'- -GCUGCCG-CUGcUGCCA-----GGCG--CaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 40529 0.66 0.853126
Target:  5'- -aGCaGCGGCGACaGGUCgGgGUUGUGg -3'
miRNA:   3'- gcUGcCGCUGCUG-CCAGgCgCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 143000 0.66 0.880509
Target:  5'- cCGGCGGUcGCG-CcGUCCGCGucaagaaucacgUCGCGg -3'
miRNA:   3'- -GCUGCCGcUGCuGcCAGGCGC------------AGCGC- -5'
14266 5' -60.5 NC_003521.1 + 126625 0.66 0.860237
Target:  5'- -cACGGCGAUgGACGGUCgGgUGaCGCGc -3'
miRNA:   3'- gcUGCCGCUG-CUGCCAGgC-GCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 15289 0.66 0.860237
Target:  5'- --cUGGUGACGACGcGUUCGuCGaCGCGc -3'
miRNA:   3'- gcuGCCGCUGCUGC-CAGGC-GCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 235133 0.66 0.886899
Target:  5'- uGACGGCGcccguuccccGCgGACGGgcgcCCGUGUCuCGa -3'
miRNA:   3'- gCUGCCGC----------UG-CUGCCa---GGCGCAGcGC- -5'
14266 5' -60.5 NC_003521.1 + 120961 0.66 0.873932
Target:  5'- aGGgGGCGG-GGCGGUuuGCGgucCGCc -3'
miRNA:   3'- gCUgCCGCUgCUGCCAggCGCa--GCGc -5'
14266 5' -60.5 NC_003521.1 + 69491 0.66 0.873932
Target:  5'- aGACGGUGGucguaGACGGcgcaggCCGCGUUGa- -3'
miRNA:   3'- gCUGCCGCUg----CUGCCa-----GGCGCAGCgc -5'
14266 5' -60.5 NC_003521.1 + 126736 0.66 0.853127
Target:  5'- gCGGuCGGCGAC-AUGG-CUGCGUUGgGg -3'
miRNA:   3'- -GCU-GCCGCUGcUGCCaGGCGCAGCgC- -5'
14266 5' -60.5 NC_003521.1 + 196953 0.66 0.853127
Target:  5'- gCGugGGCGACGGCccGGgagccggCCGgGgCGCc -3'
miRNA:   3'- -GCugCCGCUGCUG--CCa------GGCgCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 187900 0.66 0.873932
Target:  5'- gGGCGGCGGgGGCaGGUCgaucaGCaGcUCGCGa -3'
miRNA:   3'- gCUGCCGCUgCUG-CCAGg----CG-C-AGCGC- -5'
14266 5' -60.5 NC_003521.1 + 91749 0.66 0.860237
Target:  5'- uGAgGGCGuGCGagagcGCGG-CCGCGUCGa- -3'
miRNA:   3'- gCUgCCGC-UGC-----UGCCaGGCGCAGCgc -5'
14266 5' -60.5 NC_003521.1 + 30844 0.66 0.860237
Target:  5'- gGGCGccuuGCGACGgcaGCGGUUgGCGUUGUu -3'
miRNA:   3'- gCUGC----CGCUGC---UGCCAGgCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 192459 0.66 0.853126
Target:  5'- gCGGCGGCgccgguuuccagGACGGCGGUcggcugaucaCCGUGUccaCGCu -3'
miRNA:   3'- -GCUGCCG------------CUGCUGCCA----------GGCGCA---GCGc -5'
14266 5' -60.5 NC_003521.1 + 49297 0.66 0.886899
Target:  5'- cCGACuuGGCGAa---GGUCCGCGgaccuacCGCGu -3'
miRNA:   3'- -GCUG--CCGCUgcugCCAGGCGCa------GCGC- -5'
14266 5' -60.5 NC_003521.1 + 123277 0.66 0.852406
Target:  5'- gCG-UGaGCGACGACagcgucaGGUCCGCGg-GCGa -3'
miRNA:   3'- -GCuGC-CGCUGCUG-------CCAGGCGCagCGC- -5'
14266 5' -60.5 NC_003521.1 + 28859 0.66 0.867174
Target:  5'- gCGGCGGCG-CGgcACGGUCga-GUCGCc -3'
miRNA:   3'- -GCUGCCGCuGC--UGCCAGgcgCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 132634 0.66 0.873932
Target:  5'- uCGGCGGCGGCGccaccgGCGGuUCUGCuuccUCGUc -3'
miRNA:   3'- -GCUGCCGCUGC------UGCC-AGGCGc---AGCGc -5'
14266 5' -60.5 NC_003521.1 + 178975 0.66 0.853127
Target:  5'- gGACaGGCGcCG-CGGuUCCGCGgCGCc -3'
miRNA:   3'- gCUG-CCGCuGCuGCC-AGGCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 237993 0.66 0.880509
Target:  5'- uCGuCGGCGAuCGGuCGG-CUGgGUCGCc -3'
miRNA:   3'- -GCuGCCGCU-GCU-GCCaGGCgCAGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.