miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 5' -60.5 NC_003521.1 + 18734 0.7 0.646243
Target:  5'- gCGGCGGCGaucgugGCGGCGGUggcgCCGacggGUCGCu -3'
miRNA:   3'- -GCUGCCGC------UGCUGCCA----GGCg---CAGCGc -5'
14266 5' -60.5 NC_003521.1 + 20169 1.09 0.002633
Target:  5'- aCGACGGCGACGACGGUCCGCGUCGCGa -3'
miRNA:   3'- -GCUGCCGCUGCUGCCAGGCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 21065 0.67 0.830035
Target:  5'- gCGACGuaGGCGACagagacacagacuGGUcCCGCGacggCGCGg -3'
miRNA:   3'- -GCUGCcgCUGCUG-------------CCA-GGCGCa---GCGC- -5'
14266 5' -60.5 NC_003521.1 + 23274 0.7 0.680863
Target:  5'- uGACGGCGAgCGACgugcaccgcuuccuGGUCUGCa-CGCGg -3'
miRNA:   3'- gCUGCCGCU-GCUG--------------CCAGGCGcaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 28152 0.75 0.390704
Target:  5'- gCGACGGCGGCGACcauGcCCGCGaCGCc -3'
miRNA:   3'- -GCUGCCGCUGCUGc--CaGGCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 28859 0.66 0.867174
Target:  5'- gCGGCGGCG-CGgcACGGUCga-GUCGCc -3'
miRNA:   3'- -GCUGCCGCuGC--UGCCAGgcgCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 30844 0.66 0.860237
Target:  5'- gGGCGccuuGCGACGgcaGCGGUUgGCGUUGUu -3'
miRNA:   3'- gCUGC----CGCUGC---UGCCAGgCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 30912 0.67 0.838405
Target:  5'- gCGGCaGGCGAgaGCGGUCCugggGCaGUCGCc -3'
miRNA:   3'- -GCUG-CCGCUgcUGCCAGG----CG-CAGCGc -5'
14266 5' -60.5 NC_003521.1 + 31010 0.71 0.636851
Target:  5'- aCGACGGCGcCGGCGaggaCGCGUuCGUGg -3'
miRNA:   3'- -GCUGCCGCuGCUGCcag-GCGCA-GCGC- -5'
14266 5' -60.5 NC_003521.1 + 31094 0.79 0.230208
Target:  5'- aCGACGGCGGCGGcCGGUacaCGCGgCGCa -3'
miRNA:   3'- -GCUGCCGCUGCU-GCCAg--GCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 31305 0.66 0.880509
Target:  5'- gCGGCaGCGGCGACGGUcaCCGUGa---- -3'
miRNA:   3'- -GCUGcCGCUGCUGCCA--GGCGCagcgc -5'
14266 5' -60.5 NC_003521.1 + 31456 0.67 0.838405
Target:  5'- aGcACGGCGuuaGAagccaGGUacaucacguaaCCGCGUCGCGg -3'
miRNA:   3'- gC-UGCCGCug-CUg----CCA-----------GGCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 31862 0.71 0.636851
Target:  5'- aGACGGCGGCGcggugcgaGCGGUaCCGCaccgccagGcCGCGg -3'
miRNA:   3'- gCUGCCGCUGC--------UGCCA-GGCG--------CaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 34213 0.73 0.516522
Target:  5'- gGGCGGCGuaGACGGcgcCCGUGUCGCc -3'
miRNA:   3'- gCUGCCGCugCUGCCa--GGCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 34708 0.66 0.886899
Target:  5'- ---aGGCGAaGACGGcgCCGUG-CGCGu -3'
miRNA:   3'- gcugCCGCUgCUGCCa-GGCGCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 35786 0.7 0.692935
Target:  5'- aGACGGaCGAa-ACGGaUCCaucggGCGUCGCGg -3'
miRNA:   3'- gCUGCC-GCUgcUGCC-AGG-----CGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 35809 0.69 0.729558
Target:  5'- aCGGCGGCGugGgcgagaaccugGCGGUgCGCGcCGa- -3'
miRNA:   3'- -GCUGCCGCugC-----------UGCCAgGCGCaGCgc -5'
14266 5' -60.5 NC_003521.1 + 36984 0.72 0.571347
Target:  5'- uCGGCGGCGacauccGCGACGaGg--GCGUCGCGg -3'
miRNA:   3'- -GCUGCCGC------UGCUGC-CaggCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 39294 0.67 0.815152
Target:  5'- uCGcCGGCGcCGuaGCGGaaccauucgUCgGCGUCGCGg -3'
miRNA:   3'- -GCuGCCGCuGC--UGCC---------AGgCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 39448 0.69 0.738553
Target:  5'- cCGAgccCGGCGcCGAgGG-CCGCGUCGa- -3'
miRNA:   3'- -GCU---GCCGCuGCUgCCaGGCGCAGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.