miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 5' -60.5 NC_003521.1 + 218036 0.69 0.738553
Target:  5'- gGGCGGCGGCGGCG-UCCGCa----- -3'
miRNA:   3'- gCUGCCGCUGCUGCcAGGCGcagcgc -5'
14266 5' -60.5 NC_003521.1 + 217341 0.67 0.823051
Target:  5'- uGGCGGaCGGCGGcCGGUCCuCGUacuUGCu -3'
miRNA:   3'- gCUGCC-GCUGCU-GCCAGGcGCA---GCGc -5'
14266 5' -60.5 NC_003521.1 + 215630 0.73 0.498704
Target:  5'- uGuCGGUGAgGACGGggcUCCGCaugGUCGCGg -3'
miRNA:   3'- gCuGCCGCUgCUGCC---AGGCG---CAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 214825 0.67 0.823051
Target:  5'- -cGCGGCGACGGCGGUUCcauGCuguUUGCu -3'
miRNA:   3'- gcUGCCGCUGCUGCCAGG---CGc--AGCGc -5'
14266 5' -60.5 NC_003521.1 + 212494 0.66 0.873265
Target:  5'- --uCGGCcacCGGCGGUCCGCaggccgcgccgggGUCGCu -3'
miRNA:   3'- gcuGCCGcu-GCUGCCAGGCG-------------CAGCGc -5'
14266 5' -60.5 NC_003521.1 + 212072 0.78 0.286639
Target:  5'- gGGCGGUGGCG-CGGcCCGCG-CGCGu -3'
miRNA:   3'- gCUGCCGCUGCuGCCaGGCGCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 211076 0.7 0.653751
Target:  5'- -cGCGGCGACGACGaUCCuuccugccugucCGUCGCGc -3'
miRNA:   3'- gcUGCCGCUGCUGCcAGGc-----------GCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 210430 0.71 0.59931
Target:  5'- gCGugGGCGGCGACGG-CaGCGUacUGUGc -3'
miRNA:   3'- -GCugCCGCUGCUGCCaGgCGCA--GCGC- -5'
14266 5' -60.5 NC_003521.1 + 209568 0.8 0.205679
Target:  5'- gCGACGGUGGCGGgGGUCCGgGggCGCa -3'
miRNA:   3'- -GCUGCCGCUGCUgCCAGGCgCa-GCGc -5'
14266 5' -60.5 NC_003521.1 + 209089 0.71 0.608678
Target:  5'- aGGCGGCGGaGGCGGUggCCGCGgCGUc -3'
miRNA:   3'- gCUGCCGCUgCUGCCA--GGCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 208342 0.69 0.738553
Target:  5'- -cGCGGCGACGACGacgaGUUC-UGUCGCa -3'
miRNA:   3'- gcUGCCGCUGCUGC----CAGGcGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 207928 0.69 0.738553
Target:  5'- gGGCGGCGggcACGGCGGcagcaCCGgCGgCGCGg -3'
miRNA:   3'- gCUGCCGC---UGCUGCCa----GGC-GCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 206611 0.7 0.645304
Target:  5'- uGuCGGCGACccACGGUCggguggaCGUGUCGCGa -3'
miRNA:   3'- gCuGCCGCUGc-UGCCAG-------GCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 206368 0.69 0.744805
Target:  5'- -uGCGGCGACGACccccaGGcCCGCagcgccuacguggaGUCGCa -3'
miRNA:   3'- gcUGCCGCUGCUG-----CCaGGCG--------------CAGCGc -5'
14266 5' -60.5 NC_003521.1 + 200300 0.71 0.627455
Target:  5'- gCGGCGGCGuGCGGCGGgccggCCG-GUCGg- -3'
miRNA:   3'- -GCUGCCGC-UGCUGCCa----GGCgCAGCgc -5'
14266 5' -60.5 NC_003521.1 + 198778 0.71 0.627455
Target:  5'- uCGugGGCGAgGugGGUagcagCUGCGUgGUGc -3'
miRNA:   3'- -GCugCCGCUgCugCCA-----GGCGCAgCGC- -5'
14266 5' -60.5 NC_003521.1 + 198209 0.71 0.608678
Target:  5'- uGGCGGCGACGGCGccgCCgGCGgcCGUGg -3'
miRNA:   3'- gCUGCCGCUGCUGCca-GG-CGCa-GCGC- -5'
14266 5' -60.5 NC_003521.1 + 197856 0.73 0.498704
Target:  5'- gGugGGCGcCGGCGGgUCGCGcUCGCu -3'
miRNA:   3'- gCugCCGCuGCUGCCaGGCGC-AGCGc -5'
14266 5' -60.5 NC_003521.1 + 196953 0.66 0.853127
Target:  5'- gCGugGGCGACGGCccGGgagccggCCGgGgCGCc -3'
miRNA:   3'- -GCugCCGCUGCUG--CCa------GGCgCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 196725 0.71 0.589961
Target:  5'- cCGGCGGCGACGGUGGUggCgGCGgCGCc -3'
miRNA:   3'- -GCUGCCGCUGCUGCCA--GgCGCaGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.