miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 5' -60.5 NC_003521.1 + 118003 0.72 0.543709
Target:  5'- aCGACGGUaGCGGCGG--CGUGUCGCu -3'
miRNA:   3'- -GCUGCCGcUGCUGCCagGCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 197856 0.73 0.498704
Target:  5'- gGugGGCGcCGGCGGgUCGCGcUCGCu -3'
miRNA:   3'- gCugCCGCuGCUGCCaGGCGC-AGCGc -5'
14266 5' -60.5 NC_003521.1 + 122612 0.76 0.353417
Target:  5'- --cCGGCGACGGCGGcggCCGCG-CGCu -3'
miRNA:   3'- gcuGCCGCUGCUGCCa--GGCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 104165 0.77 0.325447
Target:  5'- gCGGCGGCGGCG-CGGgucgcaCgGCGUUGCGg -3'
miRNA:   3'- -GCUGCCGCUGCuGCCa-----GgCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 6523 0.71 0.59931
Target:  5'- --cCGGUGACGaggGCGGUCUGCGUCcCGc -3'
miRNA:   3'- gcuGCCGCUGC---UGCCAGGCGCAGcGC- -5'
14266 5' -60.5 NC_003521.1 + 169452 0.72 0.565789
Target:  5'- gCGuCGGCGGCGGCGGguucgucgccaggCGCGUCGUc -3'
miRNA:   3'- -GCuGCCGCUGCUGCCag-----------GCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 119792 0.74 0.472509
Target:  5'- -aGCGGCGACGA-GGUCgGCGcCGCc -3'
miRNA:   3'- gcUGCCGCUGCUgCCAGgCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 212072 0.78 0.286639
Target:  5'- gGGCGGUGGCG-CGGcCCGCG-CGCGu -3'
miRNA:   3'- gCUGCCGCUGCuGCCaGGCGCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 140566 0.72 0.562092
Target:  5'- gCGGCGGCGGCGACaGcUCGuCGUCGgGc -3'
miRNA:   3'- -GCUGCCGCUGCUGcCaGGC-GCAGCgC- -5'
14266 5' -60.5 NC_003521.1 + 98635 0.78 0.274538
Target:  5'- -aGCGGCGGCGGCGGUagCgGCGUCGaCGa -3'
miRNA:   3'- gcUGCCGCUGCUGCCA--GgCGCAGC-GC- -5'
14266 5' -60.5 NC_003521.1 + 129176 0.73 0.489898
Target:  5'- aGACGGCGuGCGGCGGUuuGgGuuUCGCc -3'
miRNA:   3'- gCUGCCGC-UGCUGCCAggCgC--AGCGc -5'
14266 5' -60.5 NC_003521.1 + 111079 0.72 0.543709
Target:  5'- gGGCGGCGAaGACGGcgcggacgcgcUCgGCGUCGaCGg -3'
miRNA:   3'- gCUGCCGCUgCUGCC-----------AGgCGCAGC-GC- -5'
14266 5' -60.5 NC_003521.1 + 113780 0.74 0.447026
Target:  5'- aCGACGGCGacggccagcGCGACGGgcaCCGCGgcgGCGu -3'
miRNA:   3'- -GCUGCCGC---------UGCUGCCa--GGCGCag-CGC- -5'
14266 5' -60.5 NC_003521.1 + 113855 0.75 0.397684
Target:  5'- gCGGcCGGCGACGACGGcgcggguUCCGCGgcggcacaGCGa -3'
miRNA:   3'- -GCU-GCCGCUGCUGCC-------AGGCGCag------CGC- -5'
14266 5' -60.5 NC_003521.1 + 195197 0.77 0.332283
Target:  5'- cCGGCGGCGGUGGCcGUCUGCGUCgGCGc -3'
miRNA:   3'- -GCUGCCGCUGCUGcCAGGCGCAG-CGC- -5'
14266 5' -60.5 NC_003521.1 + 53167 0.77 0.332283
Target:  5'- gGACGGCGGCGAggaGGUCgGCGaCGCc -3'
miRNA:   3'- gCUGCCGCUGCUg--CCAGgCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 160330 0.71 0.617123
Target:  5'- cCGugGGCGGCG-CGGUggCCuccgucgucgaggGCGUCGCc -3'
miRNA:   3'- -GCugCCGCUGCuGCCA--GG-------------CGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 198209 0.71 0.608678
Target:  5'- uGGCGGCGACGGCGccgCCgGCGgcCGUGg -3'
miRNA:   3'- gCUGCCGCUGCUGCca-GG-CGCa-GCGC- -5'
14266 5' -60.5 NC_003521.1 + 172118 0.71 0.589961
Target:  5'- cCGACGGCG-CcACGGUCaugaguuCGUCGCGg -3'
miRNA:   3'- -GCUGCCGCuGcUGCCAGgc-----GCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 36984 0.72 0.571347
Target:  5'- uCGGCGGCGacauccGCGACGaGg--GCGUCGCGg -3'
miRNA:   3'- -GCUGCCGC------UGCUGC-CaggCGCAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.