miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 3' -56 NC_003521.1 + 109658 0.67 0.940865
Target:  5'- cGCGAGAUGAugcagacguaGCGGCggaugcgaUCGGCCgaggGGUc -3'
miRNA:   3'- -CGCUCUACU----------CGCCGg-------AGUUGGa---CCAc -5'
14269 3' -56 NC_003521.1 + 114751 0.68 0.884418
Target:  5'- -gGGGGUGGcGCGGCCaCAGCgCUGGa- -3'
miRNA:   3'- cgCUCUACU-CGCCGGaGUUG-GACCac -5'
14269 3' -56 NC_003521.1 + 116487 0.68 0.891057
Target:  5'- gGCGAuGAaGAGCguccgugacGGCCUCuucuGCCUGGg- -3'
miRNA:   3'- -CGCU-CUaCUCG---------CCGGAGu---UGGACCac -5'
14269 3' -56 NC_003521.1 + 124923 0.66 0.96407
Target:  5'- cGCGAGcUGAcccaGGCCUUcccgGGCCUGGa- -3'
miRNA:   3'- -CGCUCuACUcg--CCGGAG----UUGGACCac -5'
14269 3' -56 NC_003521.1 + 125108 0.73 0.676143
Target:  5'- uGCGGGAUGGGCaccacGGCCgccgUCAGCUUGGc- -3'
miRNA:   3'- -CGCUCUACUCG-----CCGG----AGUUGGACCac -5'
14269 3' -56 NC_003521.1 + 127384 0.66 0.957192
Target:  5'- uGCGuGAUGAaggGCGGCCaCAGgC-GGUGg -3'
miRNA:   3'- -CGCuCUACU---CGCCGGaGUUgGaCCAC- -5'
14269 3' -56 NC_003521.1 + 131388 0.72 0.70558
Target:  5'- cCGAGGUGAcgGGCgUCAGCCUGGa- -3'
miRNA:   3'- cGCUCUACUcgCCGgAGUUGGACCac -5'
14269 3' -56 NC_003521.1 + 135938 0.7 0.815771
Target:  5'- cGCGGGAUGuGCGacGCCUCGggcGCCUGcGa- -3'
miRNA:   3'- -CGCUCUACuCGC--CGGAGU---UGGAC-Cac -5'
14269 3' -56 NC_003521.1 + 137091 0.67 0.926284
Target:  5'- cGCGGcGGUGcuGCGGCacCUgAACCUGGUu -3'
miRNA:   3'- -CGCU-CUACu-CGCCG--GAgUUGGACCAc -5'
14269 3' -56 NC_003521.1 + 137267 0.67 0.920972
Target:  5'- aGCGGGcaGAGCgggGGCCccagCGACCUGGa- -3'
miRNA:   3'- -CGCUCuaCUCG---CCGGa---GUUGGACCac -5'
14269 3' -56 NC_003521.1 + 151276 0.69 0.877568
Target:  5'- aGCGcGAcGAGUgGGCCcgCAGCCUGGg- -3'
miRNA:   3'- -CGCuCUaCUCG-CCGGa-GUUGGACCac -5'
14269 3' -56 NC_003521.1 + 153019 0.71 0.78981
Target:  5'- gGCGugguaccuaaGGAUGAGCgcuacgGGCCUCAgcACCUGGc- -3'
miRNA:   3'- -CGC----------UCUACUCG------CCGGAGU--UGGACCac -5'
14269 3' -56 NC_003521.1 + 153708 0.7 0.798609
Target:  5'- cGCGAcgagguGGUGGGCgccacgcaGGCCuUCAACCUGGa- -3'
miRNA:   3'- -CGCU------CUACUCG--------CCGG-AGUUGGACCac -5'
14269 3' -56 NC_003521.1 + 154868 0.67 0.938111
Target:  5'- aCGAGu---GCGGCCUCAugCUgcgcuacaugcugcaGGUGg -3'
miRNA:   3'- cGCUCuacuCGCCGGAGUugGA---------------CCAC- -5'
14269 3' -56 NC_003521.1 + 156595 0.8 0.296989
Target:  5'- cCGAGGUGGugcagcGCGGCCUCucgcGCCUGGUGc -3'
miRNA:   3'- cGCUCUACU------CGCCGGAGu---UGGACCAC- -5'
14269 3' -56 NC_003521.1 + 158863 0.69 0.877568
Target:  5'- cGCGAGAccuGCaGCCUUAACUgcaUGGUGa -3'
miRNA:   3'- -CGCUCUacuCGcCGGAGUUGG---ACCAC- -5'
14269 3' -56 NC_003521.1 + 164454 0.7 0.82412
Target:  5'- cGCGGGccUGAGCaugaagGGCgUgGACCUGGUGc -3'
miRNA:   3'- -CGCUCu-ACUCG------CCGgAgUUGGACCAC- -5'
14269 3' -56 NC_003521.1 + 165447 0.67 0.926284
Target:  5'- gGCGAGggGuGGCaGGCCUUGagcACCaGGUGg -3'
miRNA:   3'- -CGCUCuaC-UCG-CCGGAGU---UGGaCCAC- -5'
14269 3' -56 NC_003521.1 + 168773 0.71 0.743969
Target:  5'- -gGAGAUGAGCaagGGUCUgCAccaggACCUGGUGc -3'
miRNA:   3'- cgCUCUACUCG---CCGGA-GU-----UGGACCAC- -5'
14269 3' -56 NC_003521.1 + 174484 0.67 0.920972
Target:  5'- aGCGGGAuccaguugcUGccaGGCGGCCUCcacGGCUUGGa- -3'
miRNA:   3'- -CGCUCU---------AC---UCGCCGGAG---UUGGACCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.