miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 3' -56 NC_003521.1 + 105663 0.68 0.884418
Target:  5'- -gGGGGUGGGCGGCacgaUCAguuGCCcgauggGGUGg -3'
miRNA:   3'- cgCUCUACUCGCCGg---AGU---UGGa-----CCAC- -5'
14269 3' -56 NC_003521.1 + 116487 0.68 0.891057
Target:  5'- gGCGAuGAaGAGCguccgugacGGCCUCuucuGCCUGGg- -3'
miRNA:   3'- -CGCU-CUaCUCG---------CCGGAGu---UGGACCac -5'
14269 3' -56 NC_003521.1 + 101735 0.68 0.903688
Target:  5'- gGCGAGAUGGGgaaGGCCggcaggucgugCGGCggaUGGUGg -3'
miRNA:   3'- -CGCUCUACUCg--CCGGa----------GUUGg--ACCAC- -5'
14269 3' -56 NC_003521.1 + 114751 0.68 0.884418
Target:  5'- -gGGGGUGGcGCGGCCaCAGCgCUGGa- -3'
miRNA:   3'- cgCUCUACU-CGCCGGaGUUG-GACCac -5'
14269 3' -56 NC_003521.1 + 190593 0.68 0.891057
Target:  5'- gGCGAG--GAGUGGCCccgCGACCUGa-- -3'
miRNA:   3'- -CGCUCuaCUCGCCGGa--GUUGGACcac -5'
14269 3' -56 NC_003521.1 + 205973 0.68 0.903688
Target:  5'- aCGuGGUGGGCGGCuCUCAcucgcccuACCUGcUGa -3'
miRNA:   3'- cGCuCUACUCGCCG-GAGU--------UGGACcAC- -5'
14269 3' -56 NC_003521.1 + 174484 0.67 0.920972
Target:  5'- aGCGGGAuccaguugcUGccaGGCGGCCUCcacGGCUUGGa- -3'
miRNA:   3'- -CGCUCU---------AC---UCGCCGGAG---UUGGACCac -5'
14269 3' -56 NC_003521.1 + 77742 0.67 0.920972
Target:  5'- cCGAGGacGGGcCGGCCUCGGCgUGGc- -3'
miRNA:   3'- cGCUCUa-CUC-GCCGGAGUUGgACCac -5'
14269 3' -56 NC_003521.1 + 137091 0.67 0.926284
Target:  5'- cGCGGcGGUGcuGCGGCacCUgAACCUGGUu -3'
miRNA:   3'- -CGCU-CUACu-CGCCG--GAgUUGGACCAc -5'
14269 3' -56 NC_003521.1 + 109658 0.67 0.940865
Target:  5'- cGCGAGAUGAugcagacguaGCGGCggaugcgaUCGGCCgaggGGUc -3'
miRNA:   3'- -CGCUCUACU----------CGCCGg-------AGUUGGa---CCAc -5'
14269 3' -56 NC_003521.1 + 62081 0.69 0.880333
Target:  5'- cCGAGAcggacagacccugauUGAGCGGcCCUC-GCCaugGGUGa -3'
miRNA:   3'- cGCUCU---------------ACUCGCC-GGAGuUGGa--CCAC- -5'
14269 3' -56 NC_003521.1 + 158863 0.69 0.877568
Target:  5'- cGCGAGAccuGCaGCCUUAACUgcaUGGUGa -3'
miRNA:   3'- -CGCUCUacuCGcCGGAGUUGG---ACCAC- -5'
14269 3' -56 NC_003521.1 + 12214 0.69 0.863252
Target:  5'- gGUGAGAUGAcGCGGCCccUCAugCUcugcGGg- -3'
miRNA:   3'- -CGCUCUACU-CGCCGG--AGUugGA----CCac -5'
14269 3' -56 NC_003521.1 + 184146 0.69 0.848148
Target:  5'- -----cUGGGCGGCUacugCGACCUGGUGc -3'
miRNA:   3'- cgcucuACUCGCCGGa---GUUGGACCAC- -5'
14269 3' -56 NC_003521.1 + 164454 0.7 0.82412
Target:  5'- cGCGGGccUGAGCaugaagGGCgUgGACCUGGUGc -3'
miRNA:   3'- -CGCUCu-ACUCG------CCGgAgUUGGACCAC- -5'
14269 3' -56 NC_003521.1 + 153708 0.7 0.798609
Target:  5'- cGCGAcgagguGGUGGGCgccacgcaGGCCuUCAACCUGGa- -3'
miRNA:   3'- -CGCU------CUACUCG--------CCGG-AGUUGGACCac -5'
14269 3' -56 NC_003521.1 + 153019 0.71 0.78981
Target:  5'- gGCGugguaccuaaGGAUGAGCgcuacgGGCCUCAgcACCUGGc- -3'
miRNA:   3'- -CGC----------UCUACUCG------CCGGAGU--UGGACCac -5'
14269 3' -56 NC_003521.1 + 168773 0.71 0.743969
Target:  5'- -gGAGAUGAGCaagGGUCUgCAccaggACCUGGUGc -3'
miRNA:   3'- cgCUCUACUCG---CCGGA-GU-----UGGACCAC- -5'
14269 3' -56 NC_003521.1 + 21924 0.73 0.686001
Target:  5'- uCGAGAcccuggcGGGCGGCCUCGGgCUGGa- -3'
miRNA:   3'- cGCUCUa------CUCGCCGGAGUUgGACCac -5'
14269 3' -56 NC_003521.1 + 124923 0.66 0.96407
Target:  5'- cGCGAGcUGAcccaGGCCUUcccgGGCCUGGa- -3'
miRNA:   3'- -CGCUCuACUcg--CCGGAG----UUGGACCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.