miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 3' -56 NC_003521.1 + 60138 0.66 0.95305
Target:  5'- aGCGAGGaggugucGAGCacgcaGGCCUCGcgccaacGCCUGGa- -3'
miRNA:   3'- -CGCUCUa------CUCG-----CCGGAGU-------UGGACCac -5'
14269 3' -56 NC_003521.1 + 91524 0.67 0.920972
Target:  5'- -gGAGGUGGGCGgaGCgUCGACCgGGg- -3'
miRNA:   3'- cgCUCUACUCGC--CGgAGUUGGaCCac -5'
14269 3' -56 NC_003521.1 + 137267 0.67 0.920972
Target:  5'- aGCGGGcaGAGCgggGGCCccagCGACCUGGa- -3'
miRNA:   3'- -CGCUCuaCUCG---CCGGa---GUUGGACCac -5'
14269 3' -56 NC_003521.1 + 40202 0.67 0.920972
Target:  5'- aGCu---UGAGCGGCUUC-ACCUGGa- -3'
miRNA:   3'- -CGcucuACUCGCCGGAGuUGGACCac -5'
14269 3' -56 NC_003521.1 + 234828 0.67 0.920972
Target:  5'- uCGGGGUucGUGGCCgagagCAaguucACCUGGUGg -3'
miRNA:   3'- cGCUCUAcuCGCCGGa----GU-----UGGACCAC- -5'
14269 3' -56 NC_003521.1 + 165447 0.67 0.926284
Target:  5'- gGCGAGggGuGGCaGGCCUUGagcACCaGGUGg -3'
miRNA:   3'- -CGCUCuaC-UCG-CCGGAGU---UGGaCCAC- -5'
14269 3' -56 NC_003521.1 + 87002 0.67 0.93623
Target:  5'- gGCGGuGAUGAG-GGCCaCGugCUGGaUGa -3'
miRNA:   3'- -CGCU-CUACUCgCCGGaGUugGACC-AC- -5'
14269 3' -56 NC_003521.1 + 154868 0.67 0.938111
Target:  5'- aCGAGu---GCGGCCUCAugCUgcgcuacaugcugcaGGUGg -3'
miRNA:   3'- cGCUCuacuCGCCGGAGUugGA---------------CCAC- -5'
14269 3' -56 NC_003521.1 + 60250 0.66 0.945276
Target:  5'- uGCaGGAcuUGAucgacGUGGCCcaCGACCUGGUGg -3'
miRNA:   3'- -CGcUCU--ACU-----CGCCGGa-GUUGGACCAC- -5'
14269 3' -56 NC_003521.1 + 80982 0.68 0.915435
Target:  5'- cGCGAGuagcAGCGGCCcuUCucCUUGGUGu -3'
miRNA:   3'- -CGCUCuac-UCGCCGG--AGuuGGACCAC- -5'
14269 3' -56 NC_003521.1 + 5794 0.68 0.915435
Target:  5'- aUGAGAgGAGUacGGCCUCcgaGACCUaggGGUGg -3'
miRNA:   3'- cGCUCUaCUCG--CCGGAG---UUGGA---CCAC- -5'
14269 3' -56 NC_003521.1 + 101735 0.68 0.903688
Target:  5'- gGCGAGAUGGGgaaGGCCggcaggucgugCGGCggaUGGUGg -3'
miRNA:   3'- -CGCUCUACUCg--CCGGa----------GUUGg--ACCAC- -5'
14269 3' -56 NC_003521.1 + 125108 0.73 0.676143
Target:  5'- uGCGGGAUGGGCaccacGGCCgccgUCAGCUUGGc- -3'
miRNA:   3'- -CGCUCUACUCG-----CCGG----AGUUGGACCac -5'
14269 3' -56 NC_003521.1 + 131388 0.72 0.70558
Target:  5'- cCGAGGUGAcgGGCgUCAGCCUGGa- -3'
miRNA:   3'- cGCUCUACUcgCCGgAGUUGGACCac -5'
14269 3' -56 NC_003521.1 + 74511 0.71 0.743969
Target:  5'- uGCuGGAgcaGAGCGGCaUCAAgCUGGUGg -3'
miRNA:   3'- -CGcUCUa--CUCGCCGgAGUUgGACCAC- -5'
14269 3' -56 NC_003521.1 + 135938 0.7 0.815771
Target:  5'- cGCGGGAUGuGCGacGCCUCGggcGCCUGcGa- -3'
miRNA:   3'- -CGCUCUACuCGC--CGGAGU---UGGAC-Cac -5'
14269 3' -56 NC_003521.1 + 151276 0.69 0.877568
Target:  5'- aGCGcGAcGAGUgGGCCcgCAGCCUGGg- -3'
miRNA:   3'- -CGCuCUaCUCG-CCGGa-GUUGGACCac -5'
14269 3' -56 NC_003521.1 + 198323 0.68 0.884418
Target:  5'- uGgGGGAUGGGCGGCUa-AACCUG-UGa -3'
miRNA:   3'- -CgCUCUACUCGCCGGagUUGGACcAC- -5'
14269 3' -56 NC_003521.1 + 105663 0.68 0.884418
Target:  5'- -gGGGGUGGGCGGCacgaUCAguuGCCcgauggGGUGg -3'
miRNA:   3'- cgCUCUACUCGCCGg---AGU---UGGa-----CCAC- -5'
14269 3' -56 NC_003521.1 + 116487 0.68 0.891057
Target:  5'- gGCGAuGAaGAGCguccgugacGGCCUCuucuGCCUGGg- -3'
miRNA:   3'- -CGCU-CUaCUCG---------CCGGAGu---UGGACCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.