miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 5' -60 NC_003521.1 + 148786 0.69 0.689013
Target:  5'- uCGCGCCGAGG---AGCCGCgGCUgCGg -3'
miRNA:   3'- -GCGUGGCUCCagcUCGGCGaCGA-GUa -5'
14269 5' -60 NC_003521.1 + 88140 0.68 0.698622
Target:  5'- aGCACCGAGccgcUgGAGCgGCUGCUgAc -3'
miRNA:   3'- gCGUGGCUCc---AgCUCGgCGACGAgUa -5'
14269 5' -60 NC_003521.1 + 127605 0.68 0.708182
Target:  5'- uGCACgUGAGGccCGAGCgcagguacUGCUGCUCGUg -3'
miRNA:   3'- gCGUG-GCUCCa-GCUCG--------GCGACGAGUA- -5'
14269 5' -60 NC_003521.1 + 53541 0.68 0.717682
Target:  5'- cCGCuCCG-GGUCGAgguGCCGCUGUcgCGUc -3'
miRNA:   3'- -GCGuGGCuCCAGCU---CGGCGACGa-GUA- -5'
14269 5' -60 NC_003521.1 + 28855 0.68 0.717682
Target:  5'- aGCugCGGcggcgcggcacGGUCGAGUCGCccaaGCUCAc -3'
miRNA:   3'- gCGugGCU-----------CCAGCUCGGCGa---CGAGUa -5'
14269 5' -60 NC_003521.1 + 76262 0.68 0.742979
Target:  5'- aGCACCGGuGG-CGAgaggaagagucgcuGCCGCUGCUgCGa -3'
miRNA:   3'- gCGUGGCU-CCaGCU--------------CGGCGACGA-GUa -5'
14269 5' -60 NC_003521.1 + 169519 0.68 0.745754
Target:  5'- cCGCACgGAGGagugCGAGCCGUUGa---- -3'
miRNA:   3'- -GCGUGgCUCCa---GCUCGGCGACgagua -5'
14269 5' -60 NC_003521.1 + 195498 0.67 0.75494
Target:  5'- gGCGaaGAGGUCGuAGCCGUcggccaGCUCGg -3'
miRNA:   3'- gCGUggCUCCAGC-UCGGCGa-----CGAGUa -5'
14269 5' -60 NC_003521.1 + 18757 0.67 0.75494
Target:  5'- gGCGCCGAcgGGUCGcuGCUGCgacgGCUgGUg -3'
miRNA:   3'- gCGUGGCU--CCAGCu-CGGCGa---CGAgUA- -5'
14269 5' -60 NC_003521.1 + 126971 0.67 0.758588
Target:  5'- cCGCGCCGucGUCGccggccgccccgcuGCCGCUGCcCGa -3'
miRNA:   3'- -GCGUGGCucCAGCu-------------CGGCGACGaGUa -5'
14269 5' -60 NC_003521.1 + 101353 0.67 0.764029
Target:  5'- uCGUGCUcaagGAGGUCGAGuuCCGCUGC-CGc -3'
miRNA:   3'- -GCGUGG----CUCCAGCUC--GGCGACGaGUa -5'
14269 5' -60 NC_003521.1 + 223669 0.67 0.764029
Target:  5'- uGCGCCucGGccUCGcGCCGCUGCUgGa -3'
miRNA:   3'- gCGUGGcuCC--AGCuCGGCGACGAgUa -5'
14269 5' -60 NC_003521.1 + 97374 0.67 0.781878
Target:  5'- aCGCGCUGGcGGUCGAGCgGCcagacCUCGc -3'
miRNA:   3'- -GCGUGGCU-CCAGCUCGgCGac---GAGUa -5'
14269 5' -60 NC_003521.1 + 27576 0.67 0.781878
Target:  5'- cCGCcuCCGAcguGGUCcgcGGCuCGCUGCUCAUc -3'
miRNA:   3'- -GCGu-GGCU---CCAGc--UCG-GCGACGAGUA- -5'
14269 5' -60 NC_003521.1 + 3753 0.67 0.790624
Target:  5'- uCGCGCCGGGauggagCGAGCCcugauguuGCUGCUUu- -3'
miRNA:   3'- -GCGUGGCUCca----GCUCGG--------CGACGAGua -5'
14269 5' -60 NC_003521.1 + 180488 0.67 0.790624
Target:  5'- gGCugCGcAGGUUG-GCCGgCUGCaUCAg -3'
miRNA:   3'- gCGugGC-UCCAGCuCGGC-GACG-AGUa -5'
14269 5' -60 NC_003521.1 + 129794 0.67 0.790624
Target:  5'- gCGCGCCGAGGcCGA-CCGCgucaaguuggUGCUgGg -3'
miRNA:   3'- -GCGUGGCUCCaGCUcGGCG----------ACGAgUa -5'
14269 5' -60 NC_003521.1 + 151090 0.67 0.798384
Target:  5'- -cCGCCGAccccucgGGUCGGGCCGCUGg---- -3'
miRNA:   3'- gcGUGGCU-------CCAGCUCGGCGACgagua -5'
14269 5' -60 NC_003521.1 + 7120 0.67 0.79924
Target:  5'- gGcCGCUGAGGUgGAGCUGCaUGCg--- -3'
miRNA:   3'- gC-GUGGCUCCAgCUCGGCG-ACGagua -5'
14269 5' -60 NC_003521.1 + 45036 0.67 0.79924
Target:  5'- aGgAaaGGGGUCGAgaGCCGCgccGCUCGUg -3'
miRNA:   3'- gCgUggCUCCAGCU--CGGCGa--CGAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.