miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 5' -60 NC_003521.1 + 88140 0.68 0.698622
Target:  5'- aGCACCGAGccgcUgGAGCgGCUGCUgAc -3'
miRNA:   3'- gCGUGGCUCc---AgCUCGgCGACGAgUa -5'
14269 5' -60 NC_003521.1 + 95828 0.69 0.65022
Target:  5'- gGCGCgCGAGGccUCGGuggcauGCCGCUGgCUCAg -3'
miRNA:   3'- gCGUG-GCUCC--AGCU------CGGCGAC-GAGUa -5'
14269 5' -60 NC_003521.1 + 97374 0.67 0.781878
Target:  5'- aCGCGCUGGcGGUCGAGCgGCcagacCUCGc -3'
miRNA:   3'- -GCGUGGCU-CCAGCUCGgCGac---GAGUa -5'
14269 5' -60 NC_003521.1 + 98388 0.66 0.816052
Target:  5'- gCGC-CCGAGGcuUCGGcggcGCUGCUGCUg-- -3'
miRNA:   3'- -GCGuGGCUCC--AGCU----CGGCGACGAgua -5'
14269 5' -60 NC_003521.1 + 101353 0.67 0.764029
Target:  5'- uCGUGCUcaagGAGGUCGAGuuCCGCUGC-CGc -3'
miRNA:   3'- -GCGUGG----CUCCAGCUC--GGCGACGaGUa -5'
14269 5' -60 NC_003521.1 + 109487 0.74 0.399073
Target:  5'- gCGCGCCaggcgcuccagcgaGuGGUCGcgccGGCCGCUGCUCGa -3'
miRNA:   3'- -GCGUGG--------------CuCCAGC----UCGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 116359 0.72 0.515512
Target:  5'- cCGCccgaCGAGGcCGAGCUGCUGCUg-- -3'
miRNA:   3'- -GCGug--GCUCCaGCUCGGCGACGAgua -5'
14269 5' -60 NC_003521.1 + 120282 0.79 0.206805
Target:  5'- aGCACCGGGGUUGAGCCaccGC-GCUCGg -3'
miRNA:   3'- gCGUGGCUCCAGCUCGG---CGaCGAGUa -5'
14269 5' -60 NC_003521.1 + 121035 0.66 0.807718
Target:  5'- gGCGCCGAccUCGucGCCGCUGCg--- -3'
miRNA:   3'- gCGUGGCUccAGCu-CGGCGACGagua -5'
14269 5' -60 NC_003521.1 + 121285 0.7 0.601483
Target:  5'- gGCGCCGAGGUgGuGCUGCgGCaCAa -3'
miRNA:   3'- gCGUGGCUCCAgCuCGGCGaCGaGUa -5'
14269 5' -60 NC_003521.1 + 126971 0.67 0.758588
Target:  5'- cCGCGCCGucGUCGccggccgccccgcuGCCGCUGCcCGa -3'
miRNA:   3'- -GCGUGGCucCAGCu-------------CGGCGACGaGUa -5'
14269 5' -60 NC_003521.1 + 127605 0.68 0.708182
Target:  5'- uGCACgUGAGGccCGAGCgcagguacUGCUGCUCGUg -3'
miRNA:   3'- gCGUG-GCUCCa-GCUCG--------GCGACGAGUA- -5'
14269 5' -60 NC_003521.1 + 129794 0.67 0.790624
Target:  5'- gCGCGCCGAGGcCGA-CCGCgucaaguuggUGCUgGg -3'
miRNA:   3'- -GCGUGGCUCCaGCUcGGCG----------ACGAgUa -5'
14269 5' -60 NC_003521.1 + 129951 0.66 0.832258
Target:  5'- gCGCAguuCUGccG-CGGGCCGCUGCUCu- -3'
miRNA:   3'- -GCGU---GGCucCaGCUCGGCGACGAGua -5'
14269 5' -60 NC_003521.1 + 133475 0.77 0.249069
Target:  5'- cCGC-CCGAGGUCGAggaucaccuggcGCCGCUGCUgCGg -3'
miRNA:   3'- -GCGuGGCUCCAGCU------------CGGCGACGA-GUa -5'
14269 5' -60 NC_003521.1 + 137638 0.7 0.620961
Target:  5'- gCGCAUCGcGGUCGAGUaCG-UGCUCAUu -3'
miRNA:   3'- -GCGUGGCuCCAGCUCG-GCgACGAGUA- -5'
14269 5' -60 NC_003521.1 + 139311 0.74 0.409712
Target:  5'- aGCGCCugcuGGUCGGccgcgucuggccGCCGCUGCUCGa -3'
miRNA:   3'- gCGUGGcu--CCAGCU------------CGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 140781 0.66 0.816052
Target:  5'- aGCAguUCGAcuggcuGGaCGAGCCGCUGCUgCGUc -3'
miRNA:   3'- gCGU--GGCU------CCaGCUCGGCGACGA-GUA- -5'
14269 5' -60 NC_003521.1 + 142995 0.7 0.630715
Target:  5'- uCGCACCGGcGGUCGcGCCGUccGCgUCAa -3'
miRNA:   3'- -GCGUGGCU-CCAGCuCGGCGa-CG-AGUa -5'
14269 5' -60 NC_003521.1 + 144142 0.66 0.847802
Target:  5'- uGCGCCuGGGcucCGAGgCGUUGCUCu- -3'
miRNA:   3'- gCGUGGcUCCa--GCUCgGCGACGAGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.