miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 5' -60 NC_003521.1 + 3753 0.67 0.790624
Target:  5'- uCGCGCCGGGauggagCGAGCCcugauguuGCUGCUUu- -3'
miRNA:   3'- -GCGUGGCUCca----GCUCGG--------CGACGAGua -5'
14269 5' -60 NC_003521.1 + 7120 0.67 0.79924
Target:  5'- gGcCGCUGAGGUgGAGCUGCaUGCg--- -3'
miRNA:   3'- gC-GUGGCUCCAgCUCGGCG-ACGagua -5'
14269 5' -60 NC_003521.1 + 12053 0.7 0.597595
Target:  5'- uGCACCugGAGGUCaucuacgccgacaaGAugcgcacGCCGCUGCUCAc -3'
miRNA:   3'- gCGUGG--CUCCAG--------------CU-------CGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 18140 1.06 0.002988
Target:  5'- cCGCACCGAGGUCGAGCCGCUGCUCAUg -3'
miRNA:   3'- -GCGUGGCUCCAGCUCGGCGACGAGUA- -5'
14269 5' -60 NC_003521.1 + 18757 0.67 0.75494
Target:  5'- gGCGCCGAcgGGUCGcuGCUGCgacgGCUgGUg -3'
miRNA:   3'- gCGUGGCU--CCAGCu-CGGCGa---CGAgUA- -5'
14269 5' -60 NC_003521.1 + 19546 0.7 0.620961
Target:  5'- aGgAUCGGGGUCuuGGCCGCgUGCUCGg -3'
miRNA:   3'- gCgUGGCUCCAGc-UCGGCG-ACGAGUa -5'
14269 5' -60 NC_003521.1 + 27576 0.67 0.781878
Target:  5'- cCGCcuCCGAcguGGUCcgcGGCuCGCUGCUCAUc -3'
miRNA:   3'- -GCGu-GGCU---CCAGc--UCG-GCGACGAGUA- -5'
14269 5' -60 NC_003521.1 + 27843 0.66 0.840116
Target:  5'- -uCACCaGGG-CGAGCCGCUGggCAa -3'
miRNA:   3'- gcGUGGcUCCaGCUCGGCGACgaGUa -5'
14269 5' -60 NC_003521.1 + 28855 0.68 0.717682
Target:  5'- aGCugCGGcggcgcggcacGGUCGAGUCGCccaaGCUCAc -3'
miRNA:   3'- gCGugGCU-----------CCAGCUCGGCGa---CGAGUa -5'
14269 5' -60 NC_003521.1 + 42752 0.78 0.211728
Target:  5'- gCGCGCCGAGGgcaaGAaaaaGCUGCUGCUCAa -3'
miRNA:   3'- -GCGUGGCUCCag--CU----CGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 45036 0.67 0.79924
Target:  5'- aGgAaaGGGGUCGAgaGCCGCgccGCUCGUg -3'
miRNA:   3'- gCgUggCUCCAGCU--CGGCGa--CGAGUA- -5'
14269 5' -60 NC_003521.1 + 50278 0.66 0.832258
Target:  5'- uGCAgCCG-GGUCc-GCCGCUGCUg-- -3'
miRNA:   3'- gCGU-GGCuCCAGcuCGGCGACGAgua -5'
14269 5' -60 NC_003521.1 + 53436 0.7 0.582086
Target:  5'- gGUGCgGAGGcUGuuGCCGCUGCUCAc -3'
miRNA:   3'- gCGUGgCUCCaGCu-CGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 53460 0.66 0.832258
Target:  5'- --nACCGucGUCGGgauGCUGCUGCUCGa -3'
miRNA:   3'- gcgUGGCucCAGCU---CGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 53541 0.68 0.717682
Target:  5'- cCGCuCCG-GGUCGAgguGCCGCUGUcgCGUc -3'
miRNA:   3'- -GCGuGGCuCCAGCU---CGGCGACGa-GUA- -5'
14269 5' -60 NC_003521.1 + 59715 0.71 0.572434
Target:  5'- cCGCGCCGuGGcCGAGCUGgUGgaCAUg -3'
miRNA:   3'- -GCGUGGCuCCaGCUCGGCgACgaGUA- -5'
14269 5' -60 NC_003521.1 + 60793 0.69 0.689013
Target:  5'- gGCuuuCCGAcGGUcccgucuccuaCGAGCCGCUGCUgGc -3'
miRNA:   3'- gCGu--GGCU-CCA-----------GCUCGGCGACGAgUa -5'
14269 5' -60 NC_003521.1 + 73674 0.71 0.572434
Target:  5'- aCGC-CCGAGG-CGcccaAGgCGCUGCUCAa -3'
miRNA:   3'- -GCGuGGCUCCaGC----UCgGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 74236 0.75 0.359841
Target:  5'- gGCGCCGugacgguggacgacGGGUUccugGAGUCGCUGCUCAUg -3'
miRNA:   3'- gCGUGGC--------------UCCAG----CUCGGCGACGAGUA- -5'
14269 5' -60 NC_003521.1 + 76262 0.68 0.742979
Target:  5'- aGCACCGGuGG-CGAgaggaagagucgcuGCCGCUGCUgCGa -3'
miRNA:   3'- gCGUGGCU-CCaGCU--------------CGGCGACGA-GUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.