miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 5' -60 NC_003521.1 + 223669 0.67 0.764029
Target:  5'- uGCGCCucGGccUCGcGCCGCUGCUgGa -3'
miRNA:   3'- gCGUGGcuCC--AGCuCGGCGACGAgUa -5'
14269 5' -60 NC_003521.1 + 219403 0.66 0.840116
Target:  5'- gGCACgaCGAGGcCGAGuaGCUGC-CAg -3'
miRNA:   3'- gCGUG--GCUCCaGCUCggCGACGaGUa -5'
14269 5' -60 NC_003521.1 + 212516 0.89 0.043768
Target:  5'- cCGCGCCGGGGUCGcuGCCGCUGCUCu- -3'
miRNA:   3'- -GCGUGGCUCCAGCu-CGGCGACGAGua -5'
14269 5' -60 NC_003521.1 + 200036 0.66 0.840116
Target:  5'- cCGCGCCGGGaGUCcgGAGUCGCcgaGCUUc- -3'
miRNA:   3'- -GCGUGGCUC-CAG--CUCGGCGa--CGAGua -5'
14269 5' -60 NC_003521.1 + 196659 0.72 0.487904
Target:  5'- aGUACCGAcGG-CGccAGCUGCUGCUCGa -3'
miRNA:   3'- gCGUGGCU-CCaGC--UCGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 195498 0.67 0.75494
Target:  5'- gGCGaaGAGGUCGuAGCCGUcggccaGCUCGg -3'
miRNA:   3'- gCGUggCUCCAGC-UCGGCGa-----CGAGUa -5'
14269 5' -60 NC_003521.1 + 180488 0.67 0.790624
Target:  5'- gGCugCGcAGGUUG-GCCGgCUGCaUCAg -3'
miRNA:   3'- gCGugGC-UCCAGCuCGGC-GACG-AGUa -5'
14269 5' -60 NC_003521.1 + 169519 0.68 0.745754
Target:  5'- cCGCACgGAGGagugCGAGCCGUUGa---- -3'
miRNA:   3'- -GCGUGgCUCCa---GCUCGGCGACgagua -5'
14269 5' -60 NC_003521.1 + 151090 0.67 0.798384
Target:  5'- -cCGCCGAccccucgGGUCGGGCCGCUGg---- -3'
miRNA:   3'- gcGUGGCU-------CCAGCUCGGCGACgagua -5'
14269 5' -60 NC_003521.1 + 148786 0.69 0.689013
Target:  5'- uCGCGCCGAGG---AGCCGCgGCUgCGg -3'
miRNA:   3'- -GCGUGGCUCCagcUCGGCGaCGA-GUa -5'
14269 5' -60 NC_003521.1 + 148290 0.66 0.806877
Target:  5'- aCGCACgGguagcccAGGUCGGGaaaGUUGCUCAg -3'
miRNA:   3'- -GCGUGgC-------UCCAGCUCgg-CGACGAGUa -5'
14269 5' -60 NC_003521.1 + 144142 0.66 0.847802
Target:  5'- uGCGCCuGGGcucCGAGgCGUUGCUCu- -3'
miRNA:   3'- gCGUGGcUCCa--GCUCgGCGACGAGua -5'
14269 5' -60 NC_003521.1 + 142995 0.7 0.630715
Target:  5'- uCGCACCGGcGGUCGcGCCGUccGCgUCAa -3'
miRNA:   3'- -GCGUGGCU-CCAGCuCGGCGa-CG-AGUa -5'
14269 5' -60 NC_003521.1 + 140781 0.66 0.816052
Target:  5'- aGCAguUCGAcuggcuGGaCGAGCCGCUGCUgCGUc -3'
miRNA:   3'- gCGU--GGCU------CCaGCUCGGCGACGA-GUA- -5'
14269 5' -60 NC_003521.1 + 139311 0.74 0.409712
Target:  5'- aGCGCCugcuGGUCGGccgcgucuggccGCCGCUGCUCGa -3'
miRNA:   3'- gCGUGGcu--CCAGCU------------CGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 137638 0.7 0.620961
Target:  5'- gCGCAUCGcGGUCGAGUaCG-UGCUCAUu -3'
miRNA:   3'- -GCGUGGCuCCAGCUCG-GCgACGAGUA- -5'
14269 5' -60 NC_003521.1 + 133475 0.77 0.249069
Target:  5'- cCGC-CCGAGGUCGAggaucaccuggcGCCGCUGCUgCGg -3'
miRNA:   3'- -GCGuGGCUCCAGCU------------CGGCGACGA-GUa -5'
14269 5' -60 NC_003521.1 + 129951 0.66 0.832258
Target:  5'- gCGCAguuCUGccG-CGGGCCGCUGCUCu- -3'
miRNA:   3'- -GCGU---GGCucCaGCUCGGCGACGAGua -5'
14269 5' -60 NC_003521.1 + 129794 0.67 0.790624
Target:  5'- gCGCGCCGAGGcCGA-CCGCgucaaguuggUGCUgGg -3'
miRNA:   3'- -GCGUGGCUCCaGCUcGGCG----------ACGAgUa -5'
14269 5' -60 NC_003521.1 + 127605 0.68 0.708182
Target:  5'- uGCACgUGAGGccCGAGCgcagguacUGCUGCUCGUg -3'
miRNA:   3'- gCGUG-GCUCCa-GCUCG--------GCGACGAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.