miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 5' -60 NC_003521.1 + 148290 0.66 0.806877
Target:  5'- aCGCACgGguagcccAGGUCGGGaaaGUUGCUCAg -3'
miRNA:   3'- -GCGUGgC-------UCCAGCUCgg-CGACGAGUa -5'
14269 5' -60 NC_003521.1 + 28855 0.68 0.717682
Target:  5'- aGCugCGGcggcgcggcacGGUCGAGUCGCccaaGCUCAc -3'
miRNA:   3'- gCGugGCU-----------CCAGCUCGGCGa---CGAGUa -5'
14269 5' -60 NC_003521.1 + 53541 0.68 0.717682
Target:  5'- cCGCuCCG-GGUCGAgguGCCGCUGUcgCGUc -3'
miRNA:   3'- -GCGuGGCuCCAGCU---CGGCGACGa-GUA- -5'
14269 5' -60 NC_003521.1 + 169519 0.68 0.745754
Target:  5'- cCGCACgGAGGagugCGAGCCGUUGa---- -3'
miRNA:   3'- -GCGUGgCUCCa---GCUCGGCGACgagua -5'
14269 5' -60 NC_003521.1 + 18757 0.67 0.75494
Target:  5'- gGCGCCGAcgGGUCGcuGCUGCgacgGCUgGUg -3'
miRNA:   3'- gCGUGGCU--CCAGCu-CGGCGa---CGAgUA- -5'
14269 5' -60 NC_003521.1 + 126971 0.67 0.758588
Target:  5'- cCGCGCCGucGUCGccggccgccccgcuGCCGCUGCcCGa -3'
miRNA:   3'- -GCGUGGCucCAGCu-------------CGGCGACGaGUa -5'
14269 5' -60 NC_003521.1 + 223669 0.67 0.764029
Target:  5'- uGCGCCucGGccUCGcGCCGCUGCUgGa -3'
miRNA:   3'- gCGUGGcuCC--AGCuCGGCGACGAgUa -5'
14269 5' -60 NC_003521.1 + 3753 0.67 0.790624
Target:  5'- uCGCGCCGGGauggagCGAGCCcugauguuGCUGCUUu- -3'
miRNA:   3'- -GCGUGGCUCca----GCUCGG--------CGACGAGua -5'
14269 5' -60 NC_003521.1 + 129794 0.67 0.790624
Target:  5'- gCGCGCCGAGGcCGA-CCGCgucaaguuggUGCUgGg -3'
miRNA:   3'- -GCGUGGCUCCaGCUcGGCG----------ACGAgUa -5'
14269 5' -60 NC_003521.1 + 148786 0.69 0.689013
Target:  5'- uCGCGCCGAGG---AGCCGCgGCUgCGg -3'
miRNA:   3'- -GCGUGGCUCCagcUCGGCGaCGA-GUa -5'
14269 5' -60 NC_003521.1 + 60793 0.69 0.689013
Target:  5'- gGCuuuCCGAcGGUcccgucuccuaCGAGCCGCUGCUgGc -3'
miRNA:   3'- gCGu--GGCU-CCA-----------GCUCGGCGACGAgUa -5'
14269 5' -60 NC_003521.1 + 142995 0.7 0.630715
Target:  5'- uCGCACCGGcGGUCGcGCCGUccGCgUCAa -3'
miRNA:   3'- -GCGUGGCU-CCAGCuCGGCGa-CG-AGUa -5'
14269 5' -60 NC_003521.1 + 133475 0.77 0.249069
Target:  5'- cCGC-CCGAGGUCGAggaucaccuggcGCCGCUGCUgCGg -3'
miRNA:   3'- -GCGuGGCUCCAGCU------------CGGCGACGA-GUa -5'
14269 5' -60 NC_003521.1 + 109487 0.74 0.399073
Target:  5'- gCGCGCCaggcgcuccagcgaGuGGUCGcgccGGCCGCUGCUCGa -3'
miRNA:   3'- -GCGUGG--------------CuCCAGC----UCGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 196659 0.72 0.487904
Target:  5'- aGUACCGAcGG-CGccAGCUGCUGCUCGa -3'
miRNA:   3'- gCGUGGCU-CCaGC--UCGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 116359 0.72 0.515512
Target:  5'- cCGCccgaCGAGGcCGAGCUGCUGCUg-- -3'
miRNA:   3'- -GCGug--GCUCCaGCUCGGCGACGAgua -5'
14269 5' -60 NC_003521.1 + 59715 0.71 0.572434
Target:  5'- cCGCGCCGuGGcCGAGCUGgUGgaCAUg -3'
miRNA:   3'- -GCGUGGCuCCaGCUCGGCgACgaGUA- -5'
14269 5' -60 NC_003521.1 + 73674 0.71 0.572434
Target:  5'- aCGC-CCGAGG-CGcccaAGgCGCUGCUCAa -3'
miRNA:   3'- -GCGuGGCUCCaGC----UCgGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 19546 0.7 0.620961
Target:  5'- aGgAUCGGGGUCuuGGCCGCgUGCUCGg -3'
miRNA:   3'- gCgUGGCUCCAGc-UCGGCG-ACGAGUa -5'
14269 5' -60 NC_003521.1 + 137638 0.7 0.620961
Target:  5'- gCGCAUCGcGGUCGAGUaCG-UGCUCAUu -3'
miRNA:   3'- -GCGUGGCuCCAGCUCG-GCgACGAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.