miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 5' -60 NC_003521.1 + 18140 1.06 0.002988
Target:  5'- cCGCACCGAGGUCGAGCCGCUGCUCAUg -3'
miRNA:   3'- -GCGUGGCUCCAGCUCGGCGACGAGUA- -5'
14269 5' -60 NC_003521.1 + 151090 0.67 0.798384
Target:  5'- -cCGCCGAccccucgGGUCGGGCCGCUGg---- -3'
miRNA:   3'- gcGUGGCU-------CCAGCUCGGCGACgagua -5'
14269 5' -60 NC_003521.1 + 45036 0.67 0.79924
Target:  5'- aGgAaaGGGGUCGAgaGCCGCgccGCUCGUg -3'
miRNA:   3'- gCgUggCUCCAGCU--CGGCGa--CGAGUA- -5'
14269 5' -60 NC_003521.1 + 200036 0.66 0.840116
Target:  5'- cCGCGCCGGGaGUCcgGAGUCGCcgaGCUUc- -3'
miRNA:   3'- -GCGUGGCUC-CAG--CUCGGCGa--CGAGua -5'
14269 5' -60 NC_003521.1 + 139311 0.74 0.409712
Target:  5'- aGCGCCugcuGGUCGGccgcgucuggccGCCGCUGCUCGa -3'
miRNA:   3'- gCGUGGcu--CCAGCU------------CGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 53436 0.7 0.582086
Target:  5'- gGUGCgGAGGcUGuuGCCGCUGCUCAc -3'
miRNA:   3'- gCGUGgCUCCaGCu-CGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 121285 0.7 0.601483
Target:  5'- gGCGCCGAGGUgGuGCUGCgGCaCAa -3'
miRNA:   3'- gCGUGGCUCCAgCuCGGCGaCGaGUa -5'
14269 5' -60 NC_003521.1 + 95828 0.69 0.65022
Target:  5'- gGCGCgCGAGGccUCGGuggcauGCCGCUGgCUCAg -3'
miRNA:   3'- gCGUG-GCUCC--AGCU------CGGCGAC-GAGUa -5'
14269 5' -60 NC_003521.1 + 76262 0.68 0.742979
Target:  5'- aGCACCGGuGG-CGAgaggaagagucgcuGCCGCUGCUgCGa -3'
miRNA:   3'- gCGUGGCU-CCaGCU--------------CGGCGACGA-GUa -5'
14269 5' -60 NC_003521.1 + 180488 0.67 0.790624
Target:  5'- gGCugCGcAGGUUG-GCCGgCUGCaUCAg -3'
miRNA:   3'- gCGugGC-UCCAGCuCGGC-GACG-AGUa -5'
14269 5' -60 NC_003521.1 + 101353 0.67 0.764029
Target:  5'- uCGUGCUcaagGAGGUCGAGuuCCGCUGC-CGc -3'
miRNA:   3'- -GCGUGG----CUCCAGCUC--GGCGACGaGUa -5'
14269 5' -60 NC_003521.1 + 127605 0.68 0.708182
Target:  5'- uGCACgUGAGGccCGAGCgcagguacUGCUGCUCGUg -3'
miRNA:   3'- gCGUG-GCUCCa-GCUCG--------GCGACGAGUA- -5'
14269 5' -60 NC_003521.1 + 212516 0.89 0.043768
Target:  5'- cCGCGCCGGGGUCGcuGCCGCUGCUCu- -3'
miRNA:   3'- -GCGUGGCUCCAGCu-CGGCGACGAGua -5'
14269 5' -60 NC_003521.1 + 97374 0.67 0.781878
Target:  5'- aCGCGCUGGcGGUCGAGCgGCcagacCUCGc -3'
miRNA:   3'- -GCGUGGCU-CCAGCUCGgCGac---GAGUa -5'
14269 5' -60 NC_003521.1 + 120282 0.79 0.206805
Target:  5'- aGCACCGGGGUUGAGCCaccGC-GCUCGg -3'
miRNA:   3'- gCGUGGCUCCAGCUCGG---CGaCGAGUa -5'
14269 5' -60 NC_003521.1 + 88140 0.68 0.698622
Target:  5'- aGCACCGAGccgcUgGAGCgGCUGCUgAc -3'
miRNA:   3'- gCGUGGCUCc---AgCUCGgCGACGAgUa -5'
14269 5' -60 NC_003521.1 + 27576 0.67 0.781878
Target:  5'- cCGCcuCCGAcguGGUCcgcGGCuCGCUGCUCAUc -3'
miRNA:   3'- -GCGu-GGCU---CCAGc--UCG-GCGACGAGUA- -5'
14269 5' -60 NC_003521.1 + 7120 0.67 0.79924
Target:  5'- gGcCGCUGAGGUgGAGCUGCaUGCg--- -3'
miRNA:   3'- gC-GUGGCUCCAgCUCGGCG-ACGagua -5'
14269 5' -60 NC_003521.1 + 74236 0.75 0.359841
Target:  5'- gGCGCCGugacgguggacgacGGGUUccugGAGUCGCUGCUCAUg -3'
miRNA:   3'- gCGUGGC--------------UCCAG----CUCGGCGACGAGUA- -5'
14269 5' -60 NC_003521.1 + 12053 0.7 0.597595
Target:  5'- uGCACCugGAGGUCaucuacgccgacaaGAugcgcacGCCGCUGCUCAc -3'
miRNA:   3'- gCGUGG--CUCCAG--------------CU-------CGGCGACGAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.