miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 5' -60 NC_003521.1 + 18140 1.06 0.002988
Target:  5'- cCGCACCGAGGUCGAGCCGCUGCUCAUg -3'
miRNA:   3'- -GCGUGGCUCCAGCUCGGCGACGAGUA- -5'
14269 5' -60 NC_003521.1 + 212516 0.89 0.043768
Target:  5'- cCGCGCCGGGGUCGcuGCCGCUGCUCu- -3'
miRNA:   3'- -GCGUGGCUCCAGCu-CGGCGACGAGua -5'
14269 5' -60 NC_003521.1 + 120282 0.79 0.206805
Target:  5'- aGCACCGGGGUUGAGCCaccGC-GCUCGg -3'
miRNA:   3'- gCGUGGCUCCAGCUCGG---CGaCGAGUa -5'
14269 5' -60 NC_003521.1 + 42752 0.78 0.211728
Target:  5'- gCGCGCCGAGGgcaaGAaaaaGCUGCUGCUCAa -3'
miRNA:   3'- -GCGUGGCUCCag--CU----CGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 133475 0.77 0.249069
Target:  5'- cCGC-CCGAGGUCGAggaucaccuggcGCCGCUGCUgCGg -3'
miRNA:   3'- -GCGuGGCUCCAGCU------------CGGCGACGA-GUa -5'
14269 5' -60 NC_003521.1 + 74236 0.75 0.359841
Target:  5'- gGCGCCGugacgguggacgacGGGUUccugGAGUCGCUGCUCAUg -3'
miRNA:   3'- gCGUGGC--------------UCCAG----CUCGGCGACGAGUA- -5'
14269 5' -60 NC_003521.1 + 109487 0.74 0.399073
Target:  5'- gCGCGCCaggcgcuccagcgaGuGGUCGcgccGGCCGCUGCUCGa -3'
miRNA:   3'- -GCGUGG--------------CuCCAGC----UCGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 139311 0.74 0.409712
Target:  5'- aGCGCCugcuGGUCGGccgcgucuggccGCCGCUGCUCGa -3'
miRNA:   3'- gCGUGGcu--CCAGCU------------CGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 196659 0.72 0.487904
Target:  5'- aGUACCGAcGG-CGccAGCUGCUGCUCGa -3'
miRNA:   3'- gCGUGGCU-CCaGC--UCGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 116359 0.72 0.515512
Target:  5'- cCGCccgaCGAGGcCGAGCUGCUGCUg-- -3'
miRNA:   3'- -GCGug--GCUCCaGCUCGGCGACGAgua -5'
14269 5' -60 NC_003521.1 + 73674 0.71 0.572434
Target:  5'- aCGC-CCGAGG-CGcccaAGgCGCUGCUCAa -3'
miRNA:   3'- -GCGuGGCUCCaGC----UCgGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 59715 0.71 0.572434
Target:  5'- cCGCGCCGuGGcCGAGCUGgUGgaCAUg -3'
miRNA:   3'- -GCGUGGCuCCaGCUCGGCgACgaGUA- -5'
14269 5' -60 NC_003521.1 + 53436 0.7 0.582086
Target:  5'- gGUGCgGAGGcUGuuGCCGCUGCUCAc -3'
miRNA:   3'- gCGUGgCUCCaGCu-CGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 12053 0.7 0.597595
Target:  5'- uGCACCugGAGGUCaucuacgccgacaaGAugcgcacGCCGCUGCUCAc -3'
miRNA:   3'- gCGUGG--CUCCAG--------------CU-------CGGCGACGAGUa -5'
14269 5' -60 NC_003521.1 + 121285 0.7 0.601483
Target:  5'- gGCGCCGAGGUgGuGCUGCgGCaCAa -3'
miRNA:   3'- gCGUGGCUCCAgCuCGGCGaCGaGUa -5'
14269 5' -60 NC_003521.1 + 137638 0.7 0.620961
Target:  5'- gCGCAUCGcGGUCGAGUaCG-UGCUCAUu -3'
miRNA:   3'- -GCGUGGCuCCAGCUCG-GCgACGAGUA- -5'
14269 5' -60 NC_003521.1 + 19546 0.7 0.620961
Target:  5'- aGgAUCGGGGUCuuGGCCGCgUGCUCGg -3'
miRNA:   3'- gCgUGGCUCCAGc-UCGGCG-ACGAGUa -5'
14269 5' -60 NC_003521.1 + 142995 0.7 0.630715
Target:  5'- uCGCACCGGcGGUCGcGCCGUccGCgUCAa -3'
miRNA:   3'- -GCGUGGCU-CCAGCuCGGCGa-CG-AGUa -5'
14269 5' -60 NC_003521.1 + 95828 0.69 0.65022
Target:  5'- gGCGCgCGAGGccUCGGuggcauGCCGCUGgCUCAg -3'
miRNA:   3'- gCGUG-GCUCC--AGCU------CGGCGAC-GAGUa -5'
14269 5' -60 NC_003521.1 + 60793 0.69 0.689013
Target:  5'- gGCuuuCCGAcGGUcccgucuccuaCGAGCCGCUGCUgGc -3'
miRNA:   3'- gCGu--GGCU-CCA-----------GCUCGGCGACGAgUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.