miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 13988 0.69 0.50758
Target:  5'- cCCGGCGCGGCGGC--GGg--CGAGGa -3'
miRNA:   3'- cGGCCGCGCCGCCGggUCugaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 105943 0.69 0.50758
Target:  5'- gGCCGGCGCGGauGaugaCCGuGugUCGGGu -3'
miRNA:   3'- -CGGCCGCGCCgcCg---GGU-CugAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 172307 0.69 0.50758
Target:  5'- uCCGGUGuCGGUGGCgCCAGGC-CGGu- -3'
miRNA:   3'- cGGCCGC-GCCGCCG-GGUCUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 137531 0.69 0.516523
Target:  5'- aCCGGCGCguGGUGGCCUAcGA--CGAGAc -3'
miRNA:   3'- cGGCCGCG--CCGCCGGGU-CUgaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 197542 0.69 0.516523
Target:  5'- aGUCGGCggacgagaGCGGCGGCgagcuCCuGAgCUCGGGAg -3'
miRNA:   3'- -CGGCCG--------CGCCGCCG-----GGuCU-GAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 209205 0.69 0.525527
Target:  5'- cGUCGGcCGCGGUGGCCCugccagcuGACccugcCGAGu -3'
miRNA:   3'- -CGGCC-GCGCCGCCGGGu-------CUGa----GCUCu -5'
14272 3' -63.5 NC_003521.1 + 145897 0.69 0.534591
Target:  5'- cGCCGGCggcgggagcaGCGGCGGUUCGcaaacGGCcuUCGAGGa -3'
miRNA:   3'- -CGGCCG----------CGCCGCCGGGU-----CUG--AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 99950 0.69 0.534591
Target:  5'- cGCaggGGgGCGGCGGCgCCucGGC-CGAGAc -3'
miRNA:   3'- -CGg--CCgCGCCGCCG-GGu-CUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 133748 0.69 0.543709
Target:  5'- uGCUGGC-CGGCaGGCCCGgcGAUUcCGGGGa -3'
miRNA:   3'- -CGGCCGcGCCG-CCGGGU--CUGA-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 105634 0.69 0.543709
Target:  5'- uGCUcgGGCGUGuGCGugaaGCCCAG-CUCGGGGg -3'
miRNA:   3'- -CGG--CCGCGC-CGC----CGGGUCuGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 90093 0.69 0.543709
Target:  5'- aGCCGGCccaGGacguGGCCCAcGGC-CGAGAg -3'
miRNA:   3'- -CGGCCGcg-CCg---CCGGGU-CUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 16743 0.69 0.552878
Target:  5'- cGCCGGCGC-GCGcGCCCgccggaGGACgagGAGGg -3'
miRNA:   3'- -CGGCCGCGcCGC-CGGG------UCUGag-CUCU- -5'
14272 3' -63.5 NC_003521.1 + 87270 0.69 0.552878
Target:  5'- cGCCGuGCGC-GUGGCCaaCGGGCcCGAGGu -3'
miRNA:   3'- -CGGC-CGCGcCGCCGG--GUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 65716 0.69 0.552878
Target:  5'- -gCGGCgccGCGGCGGCCCuGGC-CGGc- -3'
miRNA:   3'- cgGCCG---CGCCGCCGGGuCUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 58849 0.69 0.552878
Target:  5'- aCUGGCGCGGauGCCCAGcagguaaagGCccaCGAGAg -3'
miRNA:   3'- cGGCCGCGCCgcCGGGUC---------UGa--GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 110068 0.68 0.562092
Target:  5'- cCCGGCGCGGCGcucgcGCCCGccgacacgucccGACUCa--- -3'
miRNA:   3'- cGGCCGCGCCGC-----CGGGU------------CUGAGcucu -5'
14272 3' -63.5 NC_003521.1 + 19483 0.68 0.562092
Target:  5'- gGCCaGGUGCaGGUGGCCC--GCUCGGu- -3'
miRNA:   3'- -CGG-CCGCG-CCGCCGGGucUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 116884 0.68 0.562092
Target:  5'- gGCgCGGCuGCGGCGGCgCGccGGCggGAGAc -3'
miRNA:   3'- -CG-GCCG-CGCCGCCGgGU--CUGagCUCU- -5'
14272 3' -63.5 NC_003521.1 + 225585 0.68 0.571347
Target:  5'- cCUGGCGCucGGCGGCCuCGcGCUCGGc- -3'
miRNA:   3'- cGGCCGCG--CCGCCGG-GUcUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 108565 0.68 0.571347
Target:  5'- gGuuGGCGuuGCGGCCCAGgugguccaACUUGAc- -3'
miRNA:   3'- -CggCCGCgcCGCCGGGUC--------UGAGCUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.