miRNA display CGI


Results 41 - 60 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 165269 0.66 0.999692
Target:  5'- -----aGGGCgcUGGCguaGCCGCcGCCGGc -3'
miRNA:   3'- auauaaUUCGaaACUG---CGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 165217 0.71 0.979072
Target:  5'- ----cUGAGCcgUGGCGCCGC-CCGa -3'
miRNA:   3'- auauaAUUCGaaACUGCGGCGcGGCc -5'
14272 5' -49.6 NC_003521.1 + 155641 0.67 0.998096
Target:  5'- gGUGgu-AGCagaaGCGCCGUGCUGGg -3'
miRNA:   3'- aUAUaauUCGaaacUGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 155615 0.66 0.999519
Target:  5'- ------------cGGCGCgGCGCCGGg -3'
miRNA:   3'- auauaauucgaaaCUGCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 150692 0.66 0.999405
Target:  5'- -------uGCUgggUGcUGCUGCGCCGGc -3'
miRNA:   3'- auauaauuCGAa--ACuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 149396 0.68 0.996826
Target:  5'- ----gUGGGCUUcGugGCCGUgGCCGu -3'
miRNA:   3'- auauaAUUCGAAaCugCGGCG-CGGCc -5'
14272 5' -49.6 NC_003521.1 + 148421 0.7 0.983302
Target:  5'- cAUGgu--GCg--GGCgGCCGCGCCGGc -3'
miRNA:   3'- aUAUaauuCGaaaCUG-CGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 141201 0.72 0.965097
Target:  5'- ------uGGCcgUGGCGCUGCGCCGc -3'
miRNA:   3'- auauaauUCGaaACUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 139844 0.66 0.999405
Target:  5'- -----cGAGCgagaACGCCgugcGCGCCGGg -3'
miRNA:   3'- auauaaUUCGaaacUGCGG----CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 139188 0.67 0.99841
Target:  5'- -------cGCUgaacgUGACGCgcuaccaGCGCCGGg -3'
miRNA:   3'- auauaauuCGAa----ACUGCGg------CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 137828 0.67 0.999103
Target:  5'- -uUAUUAAgGCgcucACGCCGCgGCUGGg -3'
miRNA:   3'- auAUAAUU-CGaaacUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 135604 0.68 0.99731
Target:  5'- -------cGCUuuuucUUGACGCCGCGCagcucgCGGg -3'
miRNA:   3'- auauaauuCGA-----AACUGCGGCGCG------GCC- -5'
14272 5' -49.6 NC_003521.1 + 130758 0.77 0.789749
Target:  5'- -----cGGGCgcgaGCGCCGCGCCGGg -3'
miRNA:   3'- auauaaUUCGaaacUGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 130302 0.66 0.999692
Target:  5'- -----gAGGCcgcGGCGCCGCGCauccaGGu -3'
miRNA:   3'- auauaaUUCGaaaCUGCGGCGCGg----CC- -5'
14272 5' -49.6 NC_003521.1 + 129651 0.66 0.999267
Target:  5'- ------------cGGCGCCGuCGCCGGg -3'
miRNA:   3'- auauaauucgaaaCUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 129578 0.72 0.957999
Target:  5'- ------uGGCUgcuccgccGCGCCGCGCCGGc -3'
miRNA:   3'- auauaauUCGAaac-----UGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 129336 0.67 0.999103
Target:  5'- -----cAGGCggUUGAgCGCCGCGaaGGa -3'
miRNA:   3'- auauaaUUCGa-AACU-GCGGCGCggCC- -5'
14272 5' -49.6 NC_003521.1 + 128961 0.69 0.993206
Target:  5'- -----gGGGCUggcGGCGUgGCGCUGGa -3'
miRNA:   3'- auauaaUUCGAaa-CUGCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 126780 0.67 0.998909
Target:  5'- -----cAGGCccUGGCGCUGCGCgUGGu -3'
miRNA:   3'- auauaaUUCGaaACUGCGGCGCG-GCC- -5'
14272 5' -49.6 NC_003521.1 + 126067 0.72 0.96831
Target:  5'- cGUGUccAGCagcUGugGCCGCGCCa- -3'
miRNA:   3'- aUAUAauUCGaa-ACugCGGCGCGGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.