miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 59428 0.66 0.999519
Target:  5'- -------cGCgacagcGGCGCCGCcGCCGGc -3'
miRNA:   3'- auauaauuCGaaa---CUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 57833 0.66 0.999519
Target:  5'- -----gAAGCUcggccggUGACGCCGaaCGCCGu -3'
miRNA:   3'- auauaaUUCGAa------ACUGCGGC--GCGGCc -5'
14272 5' -49.6 NC_003521.1 + 175721 0.66 0.999509
Target:  5'- ------cAGCUgucGGCGCCgcucuuccuccugGCGCCGGu -3'
miRNA:   3'- auauaauUCGAaa-CUGCGG-------------CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 73335 0.66 0.999509
Target:  5'- -cUGUUGuGCUUcaagUGcaacuacGCGCCGCGCaCGGc -3'
miRNA:   3'- auAUAAUuCGAA----AC-------UGCGGCGCG-GCC- -5'
14272 5' -49.6 NC_003521.1 + 235164 0.66 0.999405
Target:  5'- -----cGAGCgcgaUUGGCGUCGCGUCa- -3'
miRNA:   3'- auauaaUUCGa---AACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 150692 0.66 0.999405
Target:  5'- -------uGCUgggUGcUGCUGCGCCGGc -3'
miRNA:   3'- auauaauuCGAa--ACuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 38067 0.66 0.999405
Target:  5'- cUGUAcagGGGUUgugGugGCCGuCGCUGGc -3'
miRNA:   3'- -AUAUaa-UUCGAaa-CugCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 210121 0.66 0.999405
Target:  5'- ----aUGAGCccgcGGCGCCGCGuuGu -3'
miRNA:   3'- auauaAUUCGaaa-CUGCGGCGCggCc -5'
14272 5' -49.6 NC_003521.1 + 120241 0.66 0.999405
Target:  5'- -----gGAGCc--GGCgGCCGCGCCGu -3'
miRNA:   3'- auauaaUUCGaaaCUG-CGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 139844 0.66 0.999405
Target:  5'- -----cGAGCgagaACGCCgugcGCGCCGGg -3'
miRNA:   3'- auauaaUUCGaaacUGCGG----CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 201239 0.66 0.999405
Target:  5'- -----aGGGCag-GAcCGCCGaCGCCGGc -3'
miRNA:   3'- auauaaUUCGaaaCU-GCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 125860 0.66 0.999267
Target:  5'- -----cAGGCgacUGACGCCGCagcaGCCGc -3'
miRNA:   3'- auauaaUUCGaa-ACUGCGGCG----CGGCc -5'
14272 5' -49.6 NC_003521.1 + 24616 0.66 0.999267
Target:  5'- cGUGUgccAGGag--GACcCCGCGCCGGu -3'
miRNA:   3'- aUAUAa--UUCgaaaCUGcGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 197384 0.66 0.999267
Target:  5'- -----gAGGCUcUGGCucGCCGC-CCGGg -3'
miRNA:   3'- auauaaUUCGAaACUG--CGGCGcGGCC- -5'
14272 5' -49.6 NC_003521.1 + 129651 0.66 0.999267
Target:  5'- ------------cGGCGCCGuCGCCGGg -3'
miRNA:   3'- auauaauucgaaaCUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 85760 0.67 0.999103
Target:  5'- ----aUGAGCgagGugGCCaGCGCCu- -3'
miRNA:   3'- auauaAUUCGaaaCugCGG-CGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 108194 0.67 0.999103
Target:  5'- -------cGCcggUGGCGCCGCcGCCGa -3'
miRNA:   3'- auauaauuCGaa-ACUGCGGCG-CGGCc -5'
14272 5' -49.6 NC_003521.1 + 170947 0.67 0.999103
Target:  5'- cUAUGgccUGGGCg-UGGCGCUGCGCggCGGc -3'
miRNA:   3'- -AUAUa--AUUCGaaACUGCGGCGCG--GCC- -5'
14272 5' -49.6 NC_003521.1 + 129336 0.67 0.999103
Target:  5'- -----cAGGCggUUGAgCGCCGCGaaGGa -3'
miRNA:   3'- auauaaUUCGa-AACU-GCGGCGCggCC- -5'
14272 5' -49.6 NC_003521.1 + 137828 0.67 0.999103
Target:  5'- -uUAUUAAgGCgcucACGCCGCgGCUGGg -3'
miRNA:   3'- auAUAAUU-CGaaacUGCGGCG-CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.