miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 2604 0.69 0.994115
Target:  5'- -------cGCUc-GACGCCGUGCCGa -3'
miRNA:   3'- auauaauuCGAaaCUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 167060 0.69 0.994115
Target:  5'- -------cGCUcaUGACGCCGgUGCCGGc -3'
miRNA:   3'- auauaauuCGAa-ACUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 98166 0.69 0.992188
Target:  5'- -------uGCUgacGGCGCUGCGCCGa -3'
miRNA:   3'- auauaauuCGAaa-CUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 211163 0.69 0.991052
Target:  5'- -----aAGGCUUUGAgaGCCaGCGcCCGGa -3'
miRNA:   3'- auauaaUUCGAAACUg-CGG-CGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 91584 0.69 0.993206
Target:  5'- cGUcgUAGGCguaguaGCCGCGCCGc -3'
miRNA:   3'- aUAuaAUUCGaaacugCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 114855 0.69 0.992188
Target:  5'- gGUGUgcgaacuGGUgcUGACGcCCGCGUCGGc -3'
miRNA:   3'- aUAUAau-----UCGaaACUGC-GGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 225736 0.68 0.99564
Target:  5'- ----gUAGGCUguUUGAUG-CGCGCCGa -3'
miRNA:   3'- auauaAUUCGA--AACUGCgGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 232820 0.68 0.996271
Target:  5'- -----gGAGCUacGGCGCUGCcCCGGu -3'
miRNA:   3'- auauaaUUCGAaaCUGCGGCGcGGCC- -5'
14272 5' -49.6 NC_003521.1 + 149396 0.68 0.996826
Target:  5'- ----gUGGGCUUcGugGCCGUgGCCGu -3'
miRNA:   3'- auauaAUUCGAAaCugCGGCG-CGGCc -5'
14272 5' -49.6 NC_003521.1 + 19860 0.68 0.996502
Target:  5'- -----gGAGCUgcagcgcucccugcUGACgGCCGCGUCGGc -3'
miRNA:   3'- auauaaUUCGAa-------------ACUG-CGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 105302 0.68 0.996826
Target:  5'- cAUGgcGGGCgugggGACGCCGCGCg-- -3'
miRNA:   3'- aUAUaaUUCGaaa--CUGCGGCGCGgcc -5'
14272 5' -49.6 NC_003521.1 + 68384 0.68 0.996271
Target:  5'- -----aGAGCgaggugGACGCCGUgagauGCCGGc -3'
miRNA:   3'- auauaaUUCGaaa---CUGCGGCG-----CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 98967 0.68 0.99564
Target:  5'- ------uGGCUggUGAgGCgGUGCCGGg -3'
miRNA:   3'- auauaauUCGAa-ACUgCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 226841 0.68 0.997731
Target:  5'- -------cGCcc-GcCGCCGCGCCGGg -3'
miRNA:   3'- auauaauuCGaaaCuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 32866 0.68 0.997692
Target:  5'- -----gAGGCcgaucggUUUGGCGcCCGCGCCGc -3'
miRNA:   3'- auauaaUUCG-------AAACUGC-GGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 190346 0.68 0.99731
Target:  5'- -------cGC--UGugGCaCGCGCCGGg -3'
miRNA:   3'- auauaauuCGaaACugCG-GCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 61693 0.68 0.99731
Target:  5'- -----gGAGCgucaggggUUGACGCUGUGCCu- -3'
miRNA:   3'- auauaaUUCGa-------AACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 166500 0.68 0.996826
Target:  5'- ------cAGCgg-GGCGCCGCGuCCGa -3'
miRNA:   3'- auauaauUCGaaaCUGCGGCGC-GGCc -5'
14272 5' -49.6 NC_003521.1 + 62109 0.68 0.996826
Target:  5'- -------cGCUUcGGCGcCCGCGCgGGg -3'
miRNA:   3'- auauaauuCGAAaCUGC-GGCGCGgCC- -5'
14272 5' -49.6 NC_003521.1 + 55537 0.68 0.996826
Target:  5'- ------cAGCga--GCGCCGCGCCGa -3'
miRNA:   3'- auauaauUCGaaacUGCGGCGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.