miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14282 5' -56.1 NC_003521.1 + 94315 0.66 0.966518
Target:  5'- gCCGCCGUUucuGCGGgucggCCGAGgGauaAUCGa -3'
miRNA:   3'- aGGUGGCAG---UGCCa----GGCUCgUg--UAGU- -5'
14282 5' -56.1 NC_003521.1 + 162316 0.66 0.966518
Target:  5'- aUCCG-CGUCGCGuGUCCGgucGGCcCGUCc -3'
miRNA:   3'- -AGGUgGCAGUGC-CAGGC---UCGuGUAGu -5'
14282 5' -56.1 NC_003521.1 + 56329 0.66 0.966518
Target:  5'- aCCACCGaggCGCGG-CCGcgcagGGCGCA-CAc -3'
miRNA:   3'- aGGUGGCa--GUGCCaGGC-----UCGUGUaGU- -5'
14282 5' -56.1 NC_003521.1 + 200094 0.66 0.966518
Target:  5'- gUCUACaGUUuauCGGUCuCGAGCGCcgCGa -3'
miRNA:   3'- -AGGUGgCAGu--GCCAG-GCUCGUGuaGU- -5'
14282 5' -56.1 NC_003521.1 + 217564 0.66 0.963367
Target:  5'- gUCGCCGUCAUGG-CgGAGauCAUCAg -3'
miRNA:   3'- aGGUGGCAGUGCCaGgCUCguGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 190059 0.66 0.963367
Target:  5'- aCCGCCG-CGCGGUCUucacGUACGUUc -3'
miRNA:   3'- aGGUGGCaGUGCCAGGcu--CGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 103582 0.66 0.963367
Target:  5'- gCCGCCGUCGgcccCGG-CCGGuGCGCGg-- -3'
miRNA:   3'- aGGUGGCAGU----GCCaGGCU-CGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 18539 0.66 0.963367
Target:  5'- -aCGCUGgCACGGggcUCUGGGCACcAUCAc -3'
miRNA:   3'- agGUGGCaGUGCC---AGGCUCGUG-UAGU- -5'
14282 5' -56.1 NC_003521.1 + 21095 0.66 0.960015
Target:  5'- cCCGCgaCGgCGCGGUCCcuccgcGCACGUCAc -3'
miRNA:   3'- aGGUG--GCaGUGCCAGGcu----CGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 176769 0.66 0.960015
Target:  5'- -gCACCGUCA-GGUCguUGAGCACcUCc -3'
miRNA:   3'- agGUGGCAGUgCCAG--GCUCGUGuAGu -5'
14282 5' -56.1 NC_003521.1 + 128502 0.66 0.960015
Target:  5'- cCCGCCGUCG-GGUCcCGuGaugGCAUCGu -3'
miRNA:   3'- aGGUGGCAGUgCCAG-GCuCg--UGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 235147 0.66 0.960014
Target:  5'- aUCGCCacCACGGacUCCGAGCGCGa-- -3'
miRNA:   3'- aGGUGGcaGUGCC--AGGCUCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 203826 0.66 0.960014
Target:  5'- cUCCGCCGcgacgcccucgUCGCGGaugucgccgCCGAGCACc--- -3'
miRNA:   3'- -AGGUGGC-----------AGUGCCa--------GGCUCGUGuagu -5'
14282 5' -56.1 NC_003521.1 + 187788 0.66 0.960014
Target:  5'- gCCGCCGUCACaGcGUCUG-GUACGgcugCAc -3'
miRNA:   3'- aGGUGGCAGUG-C-CAGGCuCGUGUa---GU- -5'
14282 5' -56.1 NC_003521.1 + 89635 0.66 0.956457
Target:  5'- gUgACCGUCGCGG-CCGAGgaGCAg-- -3'
miRNA:   3'- aGgUGGCAGUGCCaGGCUCg-UGUagu -5'
14282 5' -56.1 NC_003521.1 + 142294 0.66 0.956456
Target:  5'- gCCGCCGcugcaGCGGcccagCCGcGCGCGUCGu -3'
miRNA:   3'- aGGUGGCag---UGCCa----GGCuCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 129715 0.66 0.956456
Target:  5'- uUCUGCCGgcCGCGGcCCgucgacgcGAGCGCGUCc -3'
miRNA:   3'- -AGGUGGCa-GUGCCaGG--------CUCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 50193 0.66 0.956089
Target:  5'- cUCCGCCuccuGUC-CGGUCCgcccgaaGAGCGCgaagGUCAg -3'
miRNA:   3'- -AGGUGG----CAGuGCCAGG-------CUCGUG----UAGU- -5'
14282 5' -56.1 NC_003521.1 + 3657 0.66 0.956089
Target:  5'- gCCGCCGUCugccucgGCGG-CCGGGacccuCGUCGg -3'
miRNA:   3'- aGGUGGCAG-------UGCCaGGCUCgu---GUAGU- -5'
14282 5' -56.1 NC_003521.1 + 123961 0.66 0.956089
Target:  5'- gCCACugcgcgcgcagguCGUCGCGGUCgGcGGC-CGUCAg -3'
miRNA:   3'- aGGUG-------------GCAGUGCCAGgC-UCGuGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.