miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 3' -46.4 NC_003521.1 + 8221 1.1 0.038037
Target:  5'- cGUAACCGUUAAUGAGCACGACGUACGc -3'
miRNA:   3'- -CAUUGGCAAUUACUCGUGCUGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 228736 0.79 0.904511
Target:  5'- -gGGCUGcgUGGUGAGCAgCGGCGUGCGc -3'
miRNA:   3'- caUUGGCa-AUUACUCGU-GCUGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 126304 0.73 0.996134
Target:  5'- gGUGcCCGUggcggcGGUGGGCACGGCGgccACGa -3'
miRNA:   3'- -CAUuGGCAa-----UUACUCGUGCUGCa--UGC- -5'
14283 3' -46.4 NC_003521.1 + 220428 0.72 0.997216
Target:  5'- -cAGCUGaaaGAcGAGCACGGCGUACa -3'
miRNA:   3'- caUUGGCaa-UUaCUCGUGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 139438 0.71 0.99836
Target:  5'- cGUGGCCGUcAAgcGGCGCGACGgcucGCGc -3'
miRNA:   3'- -CAUUGGCAaUUacUCGUGCUGCa---UGC- -5'
14283 3' -46.4 NC_003521.1 + 46380 0.71 0.998877
Target:  5'- -cGGCUGUgag-GGGCGCGGgGUGCGu -3'
miRNA:   3'- caUUGGCAauuaCUCGUGCUgCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 104378 0.71 0.999078
Target:  5'- cUGACC-UUGAUGAcGCACGAguCGUACu -3'
miRNA:   3'- cAUUGGcAAUUACU-CGUGCU--GCAUGc -5'
14283 3' -46.4 NC_003521.1 + 152423 0.71 0.999078
Target:  5'- --cGCgGUUgcaGAUGAGCuCGACGUACu -3'
miRNA:   3'- cauUGgCAA---UUACUCGuGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 98040 0.71 0.999078
Target:  5'- --cGCCGUUGGUG-GCAcCGACG-ACGc -3'
miRNA:   3'- cauUGGCAAUUACuCGU-GCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 88824 0.7 0.999687
Target:  5'- cGUGACC-UUGGUGAGCACGccgcCGU-CGu -3'
miRNA:   3'- -CAUUGGcAAUUACUCGUGCu---GCAuGC- -5'
14283 3' -46.4 NC_003521.1 + 116465 0.7 0.999752
Target:  5'- -cGGCCG-UGGUGGGaCACGugGcgGCGa -3'
miRNA:   3'- caUUGGCaAUUACUC-GUGCugCa-UGC- -5'
14283 3' -46.4 NC_003521.1 + 129883 0.7 0.999752
Target:  5'- -cGGCCGggGAggagGAGgACGACG-ACGg -3'
miRNA:   3'- caUUGGCaaUUa---CUCgUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 199689 0.7 0.999752
Target:  5'- aGUAGCCGU------GCACGugGUugGa -3'
miRNA:   3'- -CAUUGGCAauuacuCGUGCugCAugC- -5'
14283 3' -46.4 NC_003521.1 + 186495 0.69 0.999805
Target:  5'- cGUGcACCGUgcgccuggugAcgGAGCACGACGcGCu -3'
miRNA:   3'- -CAU-UGGCAa---------UuaCUCGUGCUGCaUGc -5'
14283 3' -46.4 NC_003521.1 + 178449 0.69 0.999805
Target:  5'- cGUGguuCCGUUGAagGGGCGCGagagcGCGUGCa -3'
miRNA:   3'- -CAUu--GGCAAUUa-CUCGUGC-----UGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 8532 0.69 0.999848
Target:  5'- uGUGcCCGgaccGUGGGCGCGACG-ACa -3'
miRNA:   3'- -CAUuGGCaau-UACUCGUGCUGCaUGc -5'
14283 3' -46.4 NC_003521.1 + 212192 0.69 0.999848
Target:  5'- gGUAAUaguaGUUGAUGAagACGGCGUGCa -3'
miRNA:   3'- -CAUUGg---CAAUUACUcgUGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 199500 0.69 0.999883
Target:  5'- -cGAUCGgcggcGAUGAGCGCGACuGUgGCGa -3'
miRNA:   3'- caUUGGCaa---UUACUCGUGCUG-CA-UGC- -5'
14283 3' -46.4 NC_003521.1 + 147848 0.69 0.999883
Target:  5'- -cAGCCGggGGUGcaGGCGCGagaaguggaacaGCGUGCGc -3'
miRNA:   3'- caUUGGCaaUUAC--UCGUGC------------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 143900 0.68 0.999931
Target:  5'- cGUGGCCGUauuccagGAgacGGGCACGGCGcGCc -3'
miRNA:   3'- -CAUUGGCAa------UUa--CUCGUGCUGCaUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.