miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 3' -46.4 NC_003521.1 + 8221 1.1 0.038037
Target:  5'- cGUAACCGUUAAUGAGCACGACGUACGc -3'
miRNA:   3'- -CAUUGGCAAUUACUCGUGCUGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 8532 0.69 0.999848
Target:  5'- uGUGcCCGgaccGUGGGCGCGACG-ACa -3'
miRNA:   3'- -CAUuGGCaau-UACUCGUGCUGCaUGc -5'
14283 3' -46.4 NC_003521.1 + 13270 0.67 0.999994
Target:  5'- uGUAGCUGUaUGGUGGGUgACGGCGUc-- -3'
miRNA:   3'- -CAUUGGCA-AUUACUCG-UGCUGCAugc -5'
14283 3' -46.4 NC_003521.1 + 19158 0.67 0.999996
Target:  5'- gGUGACCGa----GAGCAcggcgcugguggcCGACGUGCa -3'
miRNA:   3'- -CAUUGGCaauuaCUCGU-------------GCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 35134 0.66 0.999998
Target:  5'- --cGCCGcgAcUGAGCGCGG-GUGCGc -3'
miRNA:   3'- cauUGGCaaUuACUCGUGCUgCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 39175 0.66 0.999998
Target:  5'- cUAGCgUGUUGcUGAcGCGCGACG-ACGa -3'
miRNA:   3'- cAUUG-GCAAUuACU-CGUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 46380 0.71 0.998877
Target:  5'- -cGGCUGUgag-GGGCGCGGgGUGCGu -3'
miRNA:   3'- caUUGGCAauuaCUCGUGCUgCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 54290 0.67 0.999986
Target:  5'- -aGGCCGUUGcgGcuggccacguagagcAGCGCGuCGUGCu -3'
miRNA:   3'- caUUGGCAAUuaC---------------UCGUGCuGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 64861 0.66 0.999997
Target:  5'- -aAGCUGaacg-GGGCGcCGACGUGCGc -3'
miRNA:   3'- caUUGGCaauuaCUCGU-GCUGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 66367 0.67 0.999992
Target:  5'- cGUGGCCGgcGGcGAGCAgCGacaccagcGCGUGCGu -3'
miRNA:   3'- -CAUUGGCaaUUaCUCGU-GC--------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 75904 0.66 0.999999
Target:  5'- uGUcGgCGUgGAUGGGCACGuugugcucgcgcACGUACGu -3'
miRNA:   3'- -CAuUgGCAaUUACUCGUGC------------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 76054 0.67 0.999989
Target:  5'- -gGGCCGccagacgcUUGAUGAcgGCGAUGUGCGg -3'
miRNA:   3'- caUUGGC--------AAUUACUcgUGCUGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 78125 0.66 0.999999
Target:  5'- uGUAcACC-UUGGUGGGCGCGuuaGCGgcgGCGg -3'
miRNA:   3'- -CAU-UGGcAAUUACUCGUGC---UGCa--UGC- -5'
14283 3' -46.4 NC_003521.1 + 78833 0.66 0.999999
Target:  5'- cGUAACgGUUAcgGAGCACcagccgaagGugGUGa- -3'
miRNA:   3'- -CAUUGgCAAUuaCUCGUG---------CugCAUgc -5'
14283 3' -46.4 NC_003521.1 + 84109 0.66 0.999997
Target:  5'- -aGGCCGUagucgaUAGUGGuGCAC-ACGUGCa -3'
miRNA:   3'- caUUGGCA------AUUACU-CGUGcUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 84919 0.68 0.999954
Target:  5'- cGUAGCCGgccugcucGCAgGGCGUGCGc -3'
miRNA:   3'- -CAUUGGCaauuacu-CGUgCUGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 88824 0.7 0.999687
Target:  5'- cGUGACC-UUGGUGAGCACGccgcCGU-CGu -3'
miRNA:   3'- -CAUUGGcAAUUACUCGUGCu---GCAuGC- -5'
14283 3' -46.4 NC_003521.1 + 89173 0.66 0.999999
Target:  5'- -gGGCCGUgggccUGGcccuGCugGACGUGCu -3'
miRNA:   3'- caUUGGCAauu--ACU----CGugCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 89914 0.68 0.999981
Target:  5'- --cGCCGUgGAaGGGCGCGcagucgaugacgccgGCGUGCGg -3'
miRNA:   3'- cauUGGCAaUUaCUCGUGC---------------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 95127 0.68 0.999971
Target:  5'- cGUGGCC-UUGAaGAGCuccGCGuCGUGCGa -3'
miRNA:   3'- -CAUUGGcAAUUaCUCG---UGCuGCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.