miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 3' -46.4 NC_003521.1 + 98040 0.71 0.999078
Target:  5'- --cGCCGUUGGUG-GCAcCGACG-ACGc -3'
miRNA:   3'- cauUGGCAAUUACuCGU-GCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 101210 0.66 0.999999
Target:  5'- uUGACCGa-GAUGuGCACGuuuuugGCGUugGa -3'
miRNA:   3'- cAUUGGCaaUUACuCGUGC------UGCAugC- -5'
14283 3' -46.4 NC_003521.1 + 104378 0.71 0.999078
Target:  5'- cUGACC-UUGAUGAcGCACGAguCGUACu -3'
miRNA:   3'- cAUUGGcAAUUACU-CGUGCU--GCAUGc -5'
14283 3' -46.4 NC_003521.1 + 104693 0.66 0.999999
Target:  5'- -gGGCCGUgggc-GGCGuCGACGUGCc -3'
miRNA:   3'- caUUGGCAauuacUCGU-GCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 106561 0.67 0.999992
Target:  5'- -gGGCCGgucgcgaGAGCACGAUcUGCGa -3'
miRNA:   3'- caUUGGCaauua--CUCGUGCUGcAUGC- -5'
14283 3' -46.4 NC_003521.1 + 109470 0.68 0.999961
Target:  5'- --uGCCGccGAUGAGCuuGCGACGgcACGg -3'
miRNA:   3'- cauUGGCaaUUACUCG--UGCUGCa-UGC- -5'
14283 3' -46.4 NC_003521.1 + 111190 0.66 0.999999
Target:  5'- cGgcGCCGcggacGGUGGGCugGGCGaugGCGc -3'
miRNA:   3'- -CauUGGCaa---UUACUCGugCUGCa--UGC- -5'
14283 3' -46.4 NC_003521.1 + 114592 0.66 0.999999
Target:  5'- --cACCGUUGAcaugGGGCugGgcuacacgucgaacACGUGCGu -3'
miRNA:   3'- cauUGGCAAUUa---CUCGugC--------------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 116355 0.67 0.999989
Target:  5'- -gGACCGc----GAGCGCGGCG-GCGa -3'
miRNA:   3'- caUUGGCaauuaCUCGUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 116465 0.7 0.999752
Target:  5'- -cGGCCG-UGGUGGGaCACGugGcgGCGa -3'
miRNA:   3'- caUUGGCaAUUACUC-GUGCugCa-UGC- -5'
14283 3' -46.4 NC_003521.1 + 117009 0.67 0.999996
Target:  5'- cUggUCGgcgUGAcgGAGCGCGAguCGUACGu -3'
miRNA:   3'- cAuuGGCa--AUUa-CUCGUGCU--GCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 126304 0.73 0.996134
Target:  5'- gGUGcCCGUggcggcGGUGGGCACGGCGgccACGa -3'
miRNA:   3'- -CAUuGGCAa-----UUACUCGUGCUGCa--UGC- -5'
14283 3' -46.4 NC_003521.1 + 128263 0.66 0.999999
Target:  5'- -aGGCCG-UGGUGGGCAgcGCGuUGCGg -3'
miRNA:   3'- caUUGGCaAUUACUCGUgcUGC-AUGC- -5'
14283 3' -46.4 NC_003521.1 + 129883 0.7 0.999752
Target:  5'- -cGGCCGggGAggagGAGgACGACG-ACGg -3'
miRNA:   3'- caUUGGCaaUUa---CUCgUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 139438 0.71 0.99836
Target:  5'- cGUGGCCGUcAAgcGGCGCGACGgcucGCGc -3'
miRNA:   3'- -CAUUGGCAaUUacUCGUGCUGCa---UGC- -5'
14283 3' -46.4 NC_003521.1 + 143105 0.68 0.999948
Target:  5'- --cGCCGgagGAUGAGgACGACGaguCGg -3'
miRNA:   3'- cauUGGCaa-UUACUCgUGCUGCau-GC- -5'
14283 3' -46.4 NC_003521.1 + 143193 0.68 0.999979
Target:  5'- --cGCCGcgAAcgucgagccUGAGCACGACG-ACGu -3'
miRNA:   3'- cauUGGCaaUU---------ACUCGUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 143900 0.68 0.999931
Target:  5'- cGUGGCCGUauuccagGAgacGGGCACGGCGcGCc -3'
miRNA:   3'- -CAUUGGCAa------UUa--CUCGUGCUGCaUGc -5'
14283 3' -46.4 NC_003521.1 + 147848 0.69 0.999883
Target:  5'- -cAGCCGggGGUGcaGGCGCGagaaguggaacaGCGUGCGc -3'
miRNA:   3'- caUUGGCaaUUAC--UCGUGC------------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 152295 0.66 0.999998
Target:  5'- -aGGCCGUUucGGUGcgccuGCACGGC-UGCGa -3'
miRNA:   3'- caUUGGCAA--UUACu----CGUGCUGcAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.