Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14283 | 3' | -46.4 | NC_003521.1 | + | 152423 | 0.71 | 0.999078 |
Target: 5'- --cGCgGUUgcaGAUGAGCuCGACGUACu -3' miRNA: 3'- cauUGgCAA---UUACUCGuGCUGCAUGc -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 88824 | 0.7 | 0.999687 |
Target: 5'- cGUGACC-UUGGUGAGCACGccgcCGU-CGu -3' miRNA: 3'- -CAUUGGcAAUUACUCGUGCu---GCAuGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 129883 | 0.7 | 0.999752 |
Target: 5'- -cGGCCGggGAggagGAGgACGACG-ACGg -3' miRNA: 3'- caUUGGCaaUUa---CUCgUGCUGCaUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 116465 | 0.7 | 0.999752 |
Target: 5'- -cGGCCG-UGGUGGGaCACGugGcgGCGa -3' miRNA: 3'- caUUGGCaAUUACUC-GUGCugCa-UGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 147848 | 0.69 | 0.999883 |
Target: 5'- -cAGCCGggGGUGcaGGCGCGagaaguggaacaGCGUGCGc -3' miRNA: 3'- caUUGGCaaUUAC--UCGUGC------------UGCAUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 143900 | 0.68 | 0.999931 |
Target: 5'- cGUGGCCGUauuccagGAgacGGGCACGGCGcGCc -3' miRNA: 3'- -CAUUGGCAa------UUa--CUCGUGCUGCaUGc -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 143105 | 0.68 | 0.999948 |
Target: 5'- --cGCCGgagGAUGAGgACGACGaguCGg -3' miRNA: 3'- cauUGGCaa-UUACUCgUGCUGCau-GC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 66367 | 0.67 | 0.999992 |
Target: 5'- cGUGGCCGgcGGcGAGCAgCGacaccagcGCGUGCGu -3' miRNA: 3'- -CAUUGGCaaUUaCUCGU-GC--------UGCAUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 76054 | 0.67 | 0.999989 |
Target: 5'- -gGGCCGccagacgcUUGAUGAcgGCGAUGUGCGg -3' miRNA: 3'- caUUGGC--------AAUUACUcgUGCUGCAUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 54290 | 0.67 | 0.999986 |
Target: 5'- -aGGCCGUUGcgGcuggccacguagagcAGCGCGuCGUGCu -3' miRNA: 3'- caUUGGCAAUuaC---------------UCGUGCuGCAUGc -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 184147 | 0.67 | 0.999984 |
Target: 5'- uUGAUCGUgcAUGGGCgaGCGACG-ACa -3' miRNA: 3'- cAUUGGCAauUACUCG--UGCUGCaUGc -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 143193 | 0.68 | 0.999979 |
Target: 5'- --cGCCGcgAAcgucgagccUGAGCACGACG-ACGu -3' miRNA: 3'- cauUGGCaaUU---------ACUCGUGCUGCaUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 229405 | 0.68 | 0.999979 |
Target: 5'- gGUGGCgGgUAcgGGGaCACGGCGUAUa -3' miRNA: 3'- -CAUUGgCaAUuaCUC-GUGCUGCAUGc -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 199689 | 0.7 | 0.999752 |
Target: 5'- aGUAGCCGU------GCACGugGUugGa -3' miRNA: 3'- -CAUUGGCAauuacuCGUGCugCAugC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 98040 | 0.71 | 0.999078 |
Target: 5'- --cGCCGUUGGUG-GCAcCGACG-ACGc -3' miRNA: 3'- cauUGGCAAUUACuCGU-GCUGCaUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 104378 | 0.71 | 0.999078 |
Target: 5'- cUGACC-UUGAUGAcGCACGAguCGUACu -3' miRNA: 3'- cAUUGGcAAUUACU-CGUGCU--GCAUGc -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 46380 | 0.71 | 0.998877 |
Target: 5'- -cGGCUGUgag-GGGCGCGGgGUGCGu -3' miRNA: 3'- caUUGGCAauuaCUCGUGCUgCAUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 139438 | 0.71 | 0.99836 |
Target: 5'- cGUGGCCGUcAAgcGGCGCGACGgcucGCGc -3' miRNA: 3'- -CAUUGGCAaUUacUCGUGCUGCa---UGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 126304 | 0.73 | 0.996134 |
Target: 5'- gGUGcCCGUggcggcGGUGGGCACGGCGgccACGa -3' miRNA: 3'- -CAUuGGCAa-----UUACUCGUGCUGCa--UGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 221694 | 0.66 | 0.999999 |
Target: 5'- cGUGGgucUCGUUGccGAGCACgcaGugGUACGu -3' miRNA: 3'- -CAUU---GGCAAUuaCUCGUG---CugCAUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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