miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 3' -46.4 NC_003521.1 + 64861 0.66 0.999997
Target:  5'- -aAGCUGaacg-GGGCGcCGACGUGCGc -3'
miRNA:   3'- caUUGGCaauuaCUCGU-GCUGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 54290 0.67 0.999986
Target:  5'- -aGGCCGUUGcgGcuggccacguagagcAGCGCGuCGUGCu -3'
miRNA:   3'- caUUGGCAAUuaC---------------UCGUGCuGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 76054 0.67 0.999989
Target:  5'- -gGGCCGccagacgcUUGAUGAcgGCGAUGUGCGg -3'
miRNA:   3'- caUUGGC--------AAUUACUcgUGCUGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 66367 0.67 0.999992
Target:  5'- cGUGGCCGgcGGcGAGCAgCGacaccagcGCGUGCGu -3'
miRNA:   3'- -CAUUGGCaaUUaCUCGU-GC--------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 106561 0.67 0.999992
Target:  5'- -gGGCCGgucgcgaGAGCACGAUcUGCGa -3'
miRNA:   3'- caUUGGCaauua--CUCGUGCUGcAUGC- -5'
14283 3' -46.4 NC_003521.1 + 207832 0.67 0.999994
Target:  5'- aUAGUCGaaGAUGAGCGCGAgacCGUACa -3'
miRNA:   3'- cAUUGGCaaUUACUCGUGCU---GCAUGc -5'
14283 3' -46.4 NC_003521.1 + 13270 0.67 0.999994
Target:  5'- uGUAGCUGUaUGGUGGGUgACGGCGUc-- -3'
miRNA:   3'- -CAUUGGCA-AUUACUCG-UGCUGCAugc -5'
14283 3' -46.4 NC_003521.1 + 19158 0.67 0.999996
Target:  5'- gGUGACCGa----GAGCAcggcgcugguggcCGACGUGCa -3'
miRNA:   3'- -CAUUGGCaauuaCUCGU-------------GCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 117009 0.67 0.999996
Target:  5'- cUggUCGgcgUGAcgGAGCGCGAguCGUACGu -3'
miRNA:   3'- cAuuGGCa--AUUa-CUCGUGCU--GCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 184147 0.67 0.999984
Target:  5'- uUGAUCGUgcAUGGGCgaGCGACG-ACa -3'
miRNA:   3'- cAUUGGCAauUACUCG--UGCUGCaUGc -5'
14283 3' -46.4 NC_003521.1 + 143193 0.68 0.999979
Target:  5'- --cGCCGcgAAcgucgagccUGAGCACGACG-ACGu -3'
miRNA:   3'- cauUGGCaaUU---------ACUCGUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 229405 0.68 0.999979
Target:  5'- gGUGGCgGgUAcgGGGaCACGGCGUAUa -3'
miRNA:   3'- -CAUUGgCaAUuaCUC-GUGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 220428 0.72 0.997216
Target:  5'- -cAGCUGaaaGAcGAGCACGGCGUACa -3'
miRNA:   3'- caUUGGCaa-UUaCUCGUGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 152423 0.71 0.999078
Target:  5'- --cGCgGUUgcaGAUGAGCuCGACGUACu -3'
miRNA:   3'- cauUGgCAA---UUACUCGuGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 88824 0.7 0.999687
Target:  5'- cGUGACC-UUGGUGAGCACGccgcCGU-CGu -3'
miRNA:   3'- -CAUUGGcAAUUACUCGUGCu---GCAuGC- -5'
14283 3' -46.4 NC_003521.1 + 129883 0.7 0.999752
Target:  5'- -cGGCCGggGAggagGAGgACGACG-ACGg -3'
miRNA:   3'- caUUGGCaaUUa---CUCgUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 116465 0.7 0.999752
Target:  5'- -cGGCCG-UGGUGGGaCACGugGcgGCGa -3'
miRNA:   3'- caUUGGCaAUUACUC-GUGCugCa-UGC- -5'
14283 3' -46.4 NC_003521.1 + 147848 0.69 0.999883
Target:  5'- -cAGCCGggGGUGcaGGCGCGagaaguggaacaGCGUGCGc -3'
miRNA:   3'- caUUGGCaaUUAC--UCGUGC------------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 143900 0.68 0.999931
Target:  5'- cGUGGCCGUauuccagGAgacGGGCACGGCGcGCc -3'
miRNA:   3'- -CAUUGGCAa------UUa--CUCGUGCUGCaUGc -5'
14283 3' -46.4 NC_003521.1 + 143105 0.68 0.999948
Target:  5'- --cGCCGgagGAUGAGgACGACGaguCGg -3'
miRNA:   3'- cauUGGCaa-UUACUCgUGCUGCau-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.