Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14283 | 3' | -46.4 | NC_003521.1 | + | 8221 | 1.1 | 0.038037 |
Target: 5'- cGUAACCGUUAAUGAGCACGACGUACGc -3' miRNA: 3'- -CAUUGGCAAUUACUCGUGCUGCAUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 233608 | 0.67 | 0.999984 |
Target: 5'- --cGCCGUg---GAG-ACGACGUACu -3' miRNA: 3'- cauUGGCAauuaCUCgUGCUGCAUGc -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 235251 | 0.67 | 0.999994 |
Target: 5'- -cGGCCGgUGAUGAcaGCGACGgACGg -3' miRNA: 3'- caUUGGCaAUUACUcgUGCUGCaUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 221694 | 0.66 | 0.999999 |
Target: 5'- cGUGGgucUCGUUGccGAGCACgcaGugGUACGu -3' miRNA: 3'- -CAUU---GGCAAUuaCUCGUG---CugCAUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 104378 | 0.71 | 0.999078 |
Target: 5'- cUGACC-UUGAUGAcGCACGAguCGUACu -3' miRNA: 3'- cAUUGGcAAUUACU-CGUGCU--GCAUGc -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 98040 | 0.71 | 0.999078 |
Target: 5'- --cGCCGUUGGUG-GCAcCGACG-ACGc -3' miRNA: 3'- cauUGGCAAUUACuCGU-GCUGCaUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 178449 | 0.69 | 0.999805 |
Target: 5'- cGUGguuCCGUUGAagGGGCGCGagagcGCGUGCa -3' miRNA: 3'- -CAUu--GGCAAUUa-CUCGUGC-----UGCAUGc -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 186495 | 0.69 | 0.999805 |
Target: 5'- cGUGcACCGUgcgccuggugAcgGAGCACGACGcGCu -3' miRNA: 3'- -CAU-UGGCAa---------UuaCUCGUGCUGCaUGc -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 199500 | 0.69 | 0.999883 |
Target: 5'- -cGAUCGgcggcGAUGAGCGCGACuGUgGCGa -3' miRNA: 3'- caUUGGCaa---UUACUCGUGCUG-CA-UGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 176172 | 0.67 | 0.999984 |
Target: 5'- gGUGGCaggugGUUGAUGAGCgaguugACGGCGU-CGa -3' miRNA: 3'- -CAUUGg----CAAUUACUCG------UGCUGCAuGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 109470 | 0.68 | 0.999961 |
Target: 5'- --uGCCGccGAUGAGCuuGCGACGgcACGg -3' miRNA: 3'- cauUGGCaaUUACUCG--UGCUGCa-UGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 212192 | 0.69 | 0.999848 |
Target: 5'- gGUAAUaguaGUUGAUGAagACGGCGUGCa -3' miRNA: 3'- -CAUUGg---CAAUUACUcgUGCUGCAUGc -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 126304 | 0.73 | 0.996134 |
Target: 5'- gGUGcCCGUggcggcGGUGGGCACGGCGgccACGa -3' miRNA: 3'- -CAUuGGCAa-----UUACUCGUGCUGCa--UGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 95127 | 0.68 | 0.999971 |
Target: 5'- cGUGGCC-UUGAaGAGCuccGCGuCGUGCGa -3' miRNA: 3'- -CAUUGGcAAUUaCUCG---UGCuGCAUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 139438 | 0.71 | 0.99836 |
Target: 5'- cGUGGCCGUcAAgcGGCGCGACGgcucGCGc -3' miRNA: 3'- -CAUUGGCAaUUacUCGUGCUGCa---UGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 8532 | 0.69 | 0.999848 |
Target: 5'- uGUGcCCGgaccGUGGGCGCGACG-ACa -3' miRNA: 3'- -CAUuGGCaau-UACUCGUGCUGCaUGc -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 89914 | 0.68 | 0.999981 |
Target: 5'- --cGCCGUgGAaGGGCGCGcagucgaugacgccgGCGUGCGg -3' miRNA: 3'- cauUGGCAaUUaCUCGUGC---------------UGCAUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 116355 | 0.67 | 0.999989 |
Target: 5'- -gGACCGc----GAGCGCGGCG-GCGa -3' miRNA: 3'- caUUGGCaauuaCUCGUGCUGCaUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 46380 | 0.71 | 0.998877 |
Target: 5'- -cGGCUGUgag-GGGCGCGGgGUGCGu -3' miRNA: 3'- caUUGGCAauuaCUCGUGCUgCAUGC- -5' |
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14283 | 3' | -46.4 | NC_003521.1 | + | 199689 | 0.7 | 0.999752 |
Target: 5'- aGUAGCCGU------GCACGugGUugGa -3' miRNA: 3'- -CAUUGGCAauuacuCGUGCugCAugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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