miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 3' -46.4 NC_003521.1 + 235251 0.67 0.999994
Target:  5'- -cGGCCGgUGAUGAcaGCGACGgACGg -3'
miRNA:   3'- caUUGGCaAUUACUcgUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 233608 0.67 0.999984
Target:  5'- --cGCCGUg---GAG-ACGACGUACu -3'
miRNA:   3'- cauUGGCAauuaCUCgUGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 229405 0.68 0.999979
Target:  5'- gGUGGCgGgUAcgGGGaCACGGCGUAUa -3'
miRNA:   3'- -CAUUGgCaAUuaCUC-GUGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 228736 0.79 0.904511
Target:  5'- -gGGCUGcgUGGUGAGCAgCGGCGUGCGc -3'
miRNA:   3'- caUUGGCa-AUUACUCGU-GCUGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 221694 0.66 0.999999
Target:  5'- cGUGGgucUCGUUGccGAGCACgcaGugGUACGu -3'
miRNA:   3'- -CAUU---GGCAAUuaCUCGUG---CugCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 220428 0.72 0.997216
Target:  5'- -cAGCUGaaaGAcGAGCACGGCGUACa -3'
miRNA:   3'- caUUGGCaa-UUaCUCGUGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 214808 0.66 0.999997
Target:  5'- --cGCCGUcGGgcgccGGGCGCGGCG-ACGg -3'
miRNA:   3'- cauUGGCAaUUa----CUCGUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 212192 0.69 0.999848
Target:  5'- gGUAAUaguaGUUGAUGAagACGGCGUGCa -3'
miRNA:   3'- -CAUUGg---CAAUUACUcgUGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 207832 0.67 0.999994
Target:  5'- aUAGUCGaaGAUGAGCGCGAgacCGUACa -3'
miRNA:   3'- cAUUGGCaaUUACUCGUGCU---GCAUGc -5'
14283 3' -46.4 NC_003521.1 + 199689 0.7 0.999752
Target:  5'- aGUAGCCGU------GCACGugGUugGa -3'
miRNA:   3'- -CAUUGGCAauuacuCGUGCugCAugC- -5'
14283 3' -46.4 NC_003521.1 + 199500 0.69 0.999883
Target:  5'- -cGAUCGgcggcGAUGAGCGCGACuGUgGCGa -3'
miRNA:   3'- caUUGGCaa---UUACUCGUGCUG-CA-UGC- -5'
14283 3' -46.4 NC_003521.1 + 198028 0.66 0.999999
Target:  5'- cGUGGCCGcUGccGAGCGUGA-GUACGa -3'
miRNA:   3'- -CAUUGGCaAUuaCUCGUGCUgCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 186495 0.69 0.999805
Target:  5'- cGUGcACCGUgcgccuggugAcgGAGCACGACGcGCu -3'
miRNA:   3'- -CAU-UGGCAa---------UuaCUCGUGCUGCaUGc -5'
14283 3' -46.4 NC_003521.1 + 184147 0.67 0.999984
Target:  5'- uUGAUCGUgcAUGGGCgaGCGACG-ACa -3'
miRNA:   3'- cAUUGGCAauUACUCG--UGCUGCaUGc -5'
14283 3' -46.4 NC_003521.1 + 178449 0.69 0.999805
Target:  5'- cGUGguuCCGUUGAagGGGCGCGagagcGCGUGCa -3'
miRNA:   3'- -CAUu--GGCAAUUa-CUCGUGC-----UGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 176172 0.67 0.999984
Target:  5'- gGUGGCaggugGUUGAUGAGCgaguugACGGCGU-CGa -3'
miRNA:   3'- -CAUUGg----CAAUUACUCG------UGCUGCAuGC- -5'
14283 3' -46.4 NC_003521.1 + 156478 0.66 0.999997
Target:  5'- -aGACCGgcuccuucGUGGGCAUGcucuCGUACGu -3'
miRNA:   3'- caUUGGCaau-----UACUCGUGCu---GCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 152423 0.71 0.999078
Target:  5'- --cGCgGUUgcaGAUGAGCuCGACGUACu -3'
miRNA:   3'- cauUGgCAA---UUACUCGuGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 152295 0.66 0.999998
Target:  5'- -aGGCCGUUucGGUGcgccuGCACGGC-UGCGa -3'
miRNA:   3'- caUUGGCAA--UUACu----CGUGCUGcAUGC- -5'
14283 3' -46.4 NC_003521.1 + 147848 0.69 0.999883
Target:  5'- -cAGCCGggGGUGcaGGCGCGagaaguggaacaGCGUGCGc -3'
miRNA:   3'- caUUGGCaaUUAC--UCGUGC------------UGCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.