miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14283 3' -46.4 NC_003521.1 + 13270 0.67 0.999994
Target:  5'- uGUAGCUGUaUGGUGGGUgACGGCGUc-- -3'
miRNA:   3'- -CAUUGGCA-AUUACUCG-UGCUGCAugc -5'
14283 3' -46.4 NC_003521.1 + 207832 0.67 0.999994
Target:  5'- aUAGUCGaaGAUGAGCGCGAgacCGUACa -3'
miRNA:   3'- cAUUGGCaaUUACUCGUGCU---GCAUGc -5'
14283 3' -46.4 NC_003521.1 + 235251 0.67 0.999994
Target:  5'- -cGGCCGgUGAUGAcaGCGACGgACGg -3'
miRNA:   3'- caUUGGCaAUUACUcgUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 106561 0.67 0.999992
Target:  5'- -gGGCCGgucgcgaGAGCACGAUcUGCGa -3'
miRNA:   3'- caUUGGCaauua--CUCGUGCUGcAUGC- -5'
14283 3' -46.4 NC_003521.1 + 66367 0.67 0.999992
Target:  5'- cGUGGCCGgcGGcGAGCAgCGacaccagcGCGUGCGu -3'
miRNA:   3'- -CAUUGGCaaUUaCUCGU-GC--------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 76054 0.67 0.999989
Target:  5'- -gGGCCGccagacgcUUGAUGAcgGCGAUGUGCGg -3'
miRNA:   3'- caUUGGC--------AAUUACUcgUGCUGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 116355 0.67 0.999989
Target:  5'- -gGACCGc----GAGCGCGGCG-GCGa -3'
miRNA:   3'- caUUGGCaauuaCUCGUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 54290 0.67 0.999986
Target:  5'- -aGGCCGUUGcgGcuggccacguagagcAGCGCGuCGUGCu -3'
miRNA:   3'- caUUGGCAAUuaC---------------UCGUGCuGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 184147 0.67 0.999984
Target:  5'- uUGAUCGUgcAUGGGCgaGCGACG-ACa -3'
miRNA:   3'- cAUUGGCAauUACUCG--UGCUGCaUGc -5'
14283 3' -46.4 NC_003521.1 + 176172 0.67 0.999984
Target:  5'- gGUGGCaggugGUUGAUGAGCgaguugACGGCGU-CGa -3'
miRNA:   3'- -CAUUGg----CAAUUACUCG------UGCUGCAuGC- -5'
14283 3' -46.4 NC_003521.1 + 233608 0.67 0.999984
Target:  5'- --cGCCGUg---GAG-ACGACGUACu -3'
miRNA:   3'- cauUGGCAauuaCUCgUGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 89914 0.68 0.999981
Target:  5'- --cGCCGUgGAaGGGCGCGcagucgaugacgccgGCGUGCGg -3'
miRNA:   3'- cauUGGCAaUUaCUCGUGC---------------UGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 229405 0.68 0.999979
Target:  5'- gGUGGCgGgUAcgGGGaCACGGCGUAUa -3'
miRNA:   3'- -CAUUGgCaAUuaCUC-GUGCUGCAUGc -5'
14283 3' -46.4 NC_003521.1 + 143193 0.68 0.999979
Target:  5'- --cGCCGcgAAcgucgagccUGAGCACGACG-ACGu -3'
miRNA:   3'- cauUGGCaaUU---------ACUCGUGCUGCaUGC- -5'
14283 3' -46.4 NC_003521.1 + 95127 0.68 0.999971
Target:  5'- cGUGGCC-UUGAaGAGCuccGCGuCGUGCGa -3'
miRNA:   3'- -CAUUGGcAAUUaCUCG---UGCuGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 109470 0.68 0.999961
Target:  5'- --uGCCGccGAUGAGCuuGCGACGgcACGg -3'
miRNA:   3'- cauUGGCaaUUACUCG--UGCUGCa-UGC- -5'
14283 3' -46.4 NC_003521.1 + 84919 0.68 0.999954
Target:  5'- cGUAGCCGgccugcucGCAgGGCGUGCGc -3'
miRNA:   3'- -CAUUGGCaauuacu-CGUgCUGCAUGC- -5'
14283 3' -46.4 NC_003521.1 + 143105 0.68 0.999948
Target:  5'- --cGCCGgagGAUGAGgACGACGaguCGg -3'
miRNA:   3'- cauUGGCaa-UUACUCgUGCUGCau-GC- -5'
14283 3' -46.4 NC_003521.1 + 143900 0.68 0.999931
Target:  5'- cGUGGCCGUauuccagGAgacGGGCACGGCGcGCc -3'
miRNA:   3'- -CAUUGGCAa------UUa--CUCGUGCUGCaUGc -5'
14283 3' -46.4 NC_003521.1 + 199500 0.69 0.999883
Target:  5'- -cGAUCGgcggcGAUGAGCGCGACuGUgGCGa -3'
miRNA:   3'- caUUGGCaa---UUACUCGUGCUG-CA-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.