miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14284 3' -55.9 NC_003521.1 + 7942 1.1 0.004244
Target:  5'- cGUAGCUCAUCCUCCAGAUCGCCGCGGu -3'
miRNA:   3'- -CAUCGAGUAGGAGGUCUAGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 204349 0.81 0.278147
Target:  5'- -cAGCgUCGUCCUCCGGuccuUCGUCGCGGc -3'
miRNA:   3'- caUCG-AGUAGGAGGUCu---AGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 211989 0.79 0.386339
Target:  5'- -cAGCUCGUCgUCCAGG-CGCCGCa- -3'
miRNA:   3'- caUCGAGUAGgAGGUCUaGCGGCGcc -5'
14284 3' -55.9 NC_003521.1 + 183527 0.73 0.655932
Target:  5'- --cGCUUAUCCaCCAG-UCGCCGCGc -3'
miRNA:   3'- cauCGAGUAGGaGGUCuAGCGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 75776 0.73 0.655932
Target:  5'- -aGGC-CG-CCUCCAGGUgcagaCGCCGCGGc -3'
miRNA:   3'- caUCGaGUaGGAGGUCUA-----GCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 108916 0.73 0.676657
Target:  5'- -cAGCUCcuucagcaggauggCCUCCAGAUCGCUGCc- -3'
miRNA:   3'- caUCGAGua------------GGAGGUCUAGCGGCGcc -5'
14284 3' -55.9 NC_003521.1 + 28015 0.73 0.685497
Target:  5'- --cGCugUCcUCCUCCAGcaCGCCGCGGg -3'
miRNA:   3'- cauCG--AGuAGGAGGUCuaGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 52114 0.73 0.69528
Target:  5'- -cAGCUCuga-UCCAGAUaCGCCGUGGu -3'
miRNA:   3'- caUCGAGuaggAGGUCUA-GCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 169439 0.72 0.714688
Target:  5'- -aGGCg-GUCCUCgaacagCGGGUCGCCGUGGa -3'
miRNA:   3'- caUCGagUAGGAG------GUCUAGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 236374 0.72 0.743285
Target:  5'- -aGGCggugCCUUCAGAUCGCCuCGGg -3'
miRNA:   3'- caUCGaguaGGAGGUCUAGCGGcGCC- -5'
14284 3' -55.9 NC_003521.1 + 4330 0.72 0.752646
Target:  5'- gGUGGCUgGUCCUCCucggucucggacGGAccgguUCGCCGCu- -3'
miRNA:   3'- -CAUCGAgUAGGAGG------------UCU-----AGCGGCGcc -5'
14284 3' -55.9 NC_003521.1 + 111315 0.71 0.761907
Target:  5'- cGgcGCUCGagcUCCUCCcuaaaguagGGAUCcCCGCGGa -3'
miRNA:   3'- -CauCGAGU---AGGAGG---------UCUAGcGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 222332 0.71 0.761907
Target:  5'- gGUGGCacacgggCAgcUCCUCCAGGcgacacUCGCCGCGc -3'
miRNA:   3'- -CAUCGa------GU--AGGAGGUCU------AGCGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 56991 0.71 0.780098
Target:  5'- -aGGCUC-UCCUC--GAUgGCCGCGGu -3'
miRNA:   3'- caUCGAGuAGGAGguCUAgCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 209166 0.71 0.780995
Target:  5'- -cGGCUCAccucgcgccggggagCCUCCAGAugaccccaccgUCgGCCGCGGu -3'
miRNA:   3'- caUCGAGUa--------------GGAGGUCU-----------AG-CGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 207343 0.71 0.78901
Target:  5'- -gGGCgCGUCCcUCGGGUCGgCGCGGc -3'
miRNA:   3'- caUCGaGUAGGaGGUCUAGCgGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 115410 0.71 0.79779
Target:  5'- --cGC-CAcggCCUCCGGAcucagCGCCGCGGc -3'
miRNA:   3'- cauCGaGUa--GGAGGUCUa----GCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 107297 0.71 0.80643
Target:  5'- -aGGC-CGUCgaaaauCUCCGaAUCGCCGCGGg -3'
miRNA:   3'- caUCGaGUAG------GAGGUcUAGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 141607 0.7 0.823257
Target:  5'- -cAGCccuaUCGUCaUCCAGGacugCGCCGCGGc -3'
miRNA:   3'- caUCG----AGUAGgAGGUCUa---GCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 102418 0.7 0.831429
Target:  5'- -aGGCUgGUCCacacggcgaUCCAGAcgCGCCGCaGGc -3'
miRNA:   3'- caUCGAgUAGG---------AGGUCUa-GCGGCG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.