miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14284 3' -55.9 NC_003521.1 + 218614 0.68 0.902812
Target:  5'- -cGGUUCggCCgCCAGcgCGCgGCGGu -3'
miRNA:   3'- caUCGAGuaGGaGGUCuaGCGgCGCC- -5'
14284 3' -55.9 NC_003521.1 + 59064 0.7 0.847257
Target:  5'- -cAGCUCguuGUCCUcgucggCCGGAUCGC-GCGGc -3'
miRNA:   3'- caUCGAG---UAGGA------GGUCUAGCGgCGCC- -5'
14284 3' -55.9 NC_003521.1 + 103439 0.69 0.8549
Target:  5'- -gAGCUCcg---CCAGGUCGCgGCGGu -3'
miRNA:   3'- caUCGAGuaggaGGUCUAGCGgCGCC- -5'
14284 3' -55.9 NC_003521.1 + 123086 0.69 0.8549
Target:  5'- -cAGCUCGUagggcacgcgcaCCUCCAGAccguccUCGCCG-GGc -3'
miRNA:   3'- caUCGAGUA------------GGAGGUCU------AGCGGCgCC- -5'
14284 3' -55.9 NC_003521.1 + 153503 0.69 0.8549
Target:  5'- -cAGCUgCG-CCUCCAGGcgcUCGCUGCGc -3'
miRNA:   3'- caUCGA-GUaGGAGGUCU---AGCGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 120987 0.69 0.8549
Target:  5'- -cAGCUCGUCCUCguCGGAgucggaGCCGCu- -3'
miRNA:   3'- caUCGAGUAGGAG--GUCUag----CGGCGcc -5'
14284 3' -55.9 NC_003521.1 + 70737 0.69 0.876669
Target:  5'- -cGGCacuUCGUCCagcUgCAGcgCGCCGCGGc -3'
miRNA:   3'- caUCG---AGUAGG---AgGUCuaGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 211142 0.69 0.876669
Target:  5'- -cAGCggaUCAUCCUCCAG-UCGCCcaUGGu -3'
miRNA:   3'- caUCG---AGUAGGAGGUCuAGCGGc-GCC- -5'
14284 3' -55.9 NC_003521.1 + 187430 0.69 0.883522
Target:  5'- --cGC-CAUCC-CCuGcUCGCCGCGGc -3'
miRNA:   3'- cauCGaGUAGGaGGuCuAGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 102418 0.7 0.831429
Target:  5'- -aGGCUgGUCCacacggcgaUCCAGAcgCGCCGCaGGc -3'
miRNA:   3'- caUCGAgUAGG---------AGGUCUa-GCGGCG-CC- -5'
14284 3' -55.9 NC_003521.1 + 141607 0.7 0.823257
Target:  5'- -cAGCccuaUCGUCaUCCAGGacugCGCCGCGGc -3'
miRNA:   3'- caUCG----AGUAGgAGGUCUa---GCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 115410 0.71 0.79779
Target:  5'- --cGC-CAcggCCUCCGGAcucagCGCCGCGGc -3'
miRNA:   3'- cauCGaGUa--GGAGGUCUa----GCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 75776 0.73 0.655932
Target:  5'- -aGGC-CG-CCUCCAGGUgcagaCGCCGCGGc -3'
miRNA:   3'- caUCGaGUaGGAGGUCUA-----GCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 28015 0.73 0.685497
Target:  5'- --cGCugUCcUCCUCCAGcaCGCCGCGGg -3'
miRNA:   3'- cauCG--AGuAGGAGGUCuaGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 52114 0.73 0.69528
Target:  5'- -cAGCUCuga-UCCAGAUaCGCCGUGGu -3'
miRNA:   3'- caUCGAGuaggAGGUCUA-GCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 169439 0.72 0.714688
Target:  5'- -aGGCg-GUCCUCgaacagCGGGUCGCCGUGGa -3'
miRNA:   3'- caUCGagUAGGAG------GUCUAGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 222332 0.71 0.761907
Target:  5'- gGUGGCacacgggCAgcUCCUCCAGGcgacacUCGCCGCGc -3'
miRNA:   3'- -CAUCGa------GU--AGGAGGUCU------AGCGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 56991 0.71 0.780098
Target:  5'- -aGGCUC-UCCUC--GAUgGCCGCGGu -3'
miRNA:   3'- caUCGAGuAGGAGguCUAgCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 209166 0.71 0.780995
Target:  5'- -cGGCUCAccucgcgccggggagCCUCCAGAugaccccaccgUCgGCCGCGGu -3'
miRNA:   3'- caUCGAGUa--------------GGAGGUCU-----------AG-CGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 207343 0.71 0.78901
Target:  5'- -gGGCgCGUCCcUCGGGUCGgCGCGGc -3'
miRNA:   3'- caUCGaGUAGGaGGUCUAGCgGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.