miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14284 3' -55.9 NC_003521.1 + 1766 0.66 0.960093
Target:  5'- -aGGCUC-UCUUCCucGGAacacggCGCCGCGa -3'
miRNA:   3'- caUCGAGuAGGAGG--UCUa-----GCGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 2644 0.67 0.925463
Target:  5'- uUGGCUaugAUCCUCCuGGaaGCCGgGGg -3'
miRNA:   3'- cAUCGAg--UAGGAGGuCUagCGGCgCC- -5'
14284 3' -55.9 NC_003521.1 + 4330 0.72 0.752646
Target:  5'- gGUGGCUgGUCCUCCucggucucggacGGAccgguUCGCCGCu- -3'
miRNA:   3'- -CAUCGAgUAGGAGG------------UCU-----AGCGGCGcc -5'
14284 3' -55.9 NC_003521.1 + 5242 0.66 0.966613
Target:  5'- ---uCUCGUCCUCCcGcacGUC-CCGCGGg -3'
miRNA:   3'- caucGAGUAGGAGGuC---UAGcGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 7942 1.1 0.004244
Target:  5'- cGUAGCUCAUCCUCCAGAUCGCCGCGGu -3'
miRNA:   3'- -CAUCGAGUAGGAGGUCUAGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 20617 0.67 0.925463
Target:  5'- -cGGC-CAUCUUCCAGAUgugcucggagaGCCGCGc -3'
miRNA:   3'- caUCGaGUAGGAGGUCUAg----------CGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 20910 0.66 0.963455
Target:  5'- -gAGCagGUCC-CCGGGgaccggucucaaUCGCaCGCGGg -3'
miRNA:   3'- caUCGagUAGGaGGUCU------------AGCG-GCGCC- -5'
14284 3' -55.9 NC_003521.1 + 23600 0.66 0.969574
Target:  5'- cUGGCcugCAUCCUCUucgcGAUCugcaccGCCGUGGc -3'
miRNA:   3'- cAUCGa--GUAGGAGGu---CUAG------CGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 24334 0.7 0.83143
Target:  5'- -cGGcCUCcugcUCUUCCAGAUCGCguuCGCGGu -3'
miRNA:   3'- caUC-GAGu---AGGAGGUCUAGCG---GCGCC- -5'
14284 3' -55.9 NC_003521.1 + 25314 0.69 0.890167
Target:  5'- -gGGCggUCGUCUUCCAGGUgGCCgGCa- -3'
miRNA:   3'- caUCG--AGUAGGAGGUCUAgCGG-CGcc -5'
14284 3' -55.9 NC_003521.1 + 28015 0.73 0.685497
Target:  5'- --cGCugUCcUCCUCCAGcaCGCCGCGGg -3'
miRNA:   3'- cauCG--AGuAGGAGGUCuaGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 29222 0.66 0.966613
Target:  5'- -gAGCUCAuggagaUCCUCUacuGGGccuccaGCCGCGGc -3'
miRNA:   3'- caUCGAGU------AGGAGG---UCUag----CGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 36834 0.68 0.902813
Target:  5'- -gAGCUCGUCgUCCAuGUCGUCcuacgccucgGCGGu -3'
miRNA:   3'- caUCGAGUAGgAGGUcUAGCGG----------CGCC- -5'
14284 3' -55.9 NC_003521.1 + 40783 0.67 0.935446
Target:  5'- -aAGCUCGgcgaCUCCGGAcuccCGgCGCGGu -3'
miRNA:   3'- caUCGAGUag--GAGGUCUa---GCgGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 41431 0.67 0.935446
Target:  5'- -gGGCUCAUCUUCUcGAccccCGCCGCc- -3'
miRNA:   3'- caUCGAGUAGGAGGuCUa---GCGGCGcc -5'
14284 3' -55.9 NC_003521.1 + 46105 0.67 0.944535
Target:  5'- uGUAGCgCcgCCUCCGGA-CGCaGCGu -3'
miRNA:   3'- -CAUCGaGuaGGAGGUCUaGCGgCGCc -5'
14284 3' -55.9 NC_003521.1 + 49744 0.7 0.83143
Target:  5'- -cAGCccgCcgCCgccaCCAcGGUCGCCGCGGg -3'
miRNA:   3'- caUCGa--GuaGGa---GGU-CUAGCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 52114 0.73 0.69528
Target:  5'- -cAGCUCuga-UCCAGAUaCGCCGUGGu -3'
miRNA:   3'- caUCGAGuaggAGGUCUA-GCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 54102 0.67 0.944535
Target:  5'- cUAGCaggUCGUUCUCCAGAccggagccgUCGUCGUGc -3'
miRNA:   3'- cAUCG---AGUAGGAGGUCU---------AGCGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 56991 0.71 0.780098
Target:  5'- -aGGCUC-UCCUC--GAUgGCCGCGGu -3'
miRNA:   3'- caUCGAGuAGGAGguCUAgCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.