Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14284 | 5' | -65 | NC_003521.1 | + | 217846 | 0.66 | 0.644531 |
Target: 5'- cGUCUcuCGGgGGgGGGGGGGGguuguUCGGu -3' miRNA: 3'- -CAGGc-GCCgCCgCCCCCUCCau---GGCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 40333 | 0.66 | 0.681344 |
Target: 5'- cUCCGCugcgggucccgGGgGGUGGGGGGGuGUuuuugGCgGGg -3' miRNA: 3'- cAGGCG-----------CCgCCGCCCCCUC-CA-----UGgCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 162237 | 0.66 | 0.672175 |
Target: 5'- -gCCGaCGGCgcuGGCGGGgugggcgucaacGGGGGUgcgacACCGGc -3' miRNA: 3'- caGGC-GCCG---CCGCCC------------CCUCCA-----UGGCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 71272 | 0.66 | 0.635292 |
Target: 5'- aUCgGCGGaGGCGGGGGccGcgGCaCGGg -3' miRNA: 3'- cAGgCGCCgCCGCCCCCucCa-UG-GCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 17009 | 0.66 | 0.662978 |
Target: 5'- -cCCGCGGUGGCGGcGGcGcAGGc-CCGu -3' miRNA: 3'- caGGCGCCGCCGCC-CC-C-UCCauGGCc -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 74905 | 0.66 | 0.653761 |
Target: 5'- -aCgGUGGCGGCGGuGGAGucGgcCCGGc -3' miRNA: 3'- caGgCGCCGCCGCCcCCUC--CauGGCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 197275 | 0.66 | 0.672175 |
Target: 5'- --gCGcCGGCGGCGGggagcGGGAGGgcggcucgACgGGa -3' miRNA: 3'- cagGC-GCCGCCGCC-----CCCUCCa-------UGgCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 31631 | 0.66 | 0.652839 |
Target: 5'- -aCCGCGGCcgacGGUGGGgucaucuGGAGGcuccCCGGc -3' miRNA: 3'- caGGCGCCG----CCGCCC-------CCUCCau--GGCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 186624 | 0.66 | 0.672175 |
Target: 5'- --aCGCGGCGGCGGu---GGUGgCGGc -3' miRNA: 3'- cagGCGCCGCCGCCcccuCCAUgGCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 118011 | 0.66 | 0.644531 |
Target: 5'- ---aGCGGCGGCGuGucgcugccgcGGGAcucGGUGCUGGg -3' miRNA: 3'- caggCGCCGCCGC-C----------CCCU---CCAUGGCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 11 | 0.66 | 0.681344 |
Target: 5'- cUCCGCugcgggucccgGGgGGUGGGGGGGuGUuuuugGCgGGg -3' miRNA: 3'- cAGGCG-----------CCgCCGCCCCCUC-CA-----UGgCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 240560 | 0.66 | 0.681344 |
Target: 5'- cUCCGCugcgggucccgGGgGGUGGGGGGGuGUuuuugGCgGGg -3' miRNA: 3'- cAGGCG-----------CCgCCGCCCCCUC-CA-----UGgCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 101187 | 0.66 | 0.653761 |
Target: 5'- cGUCCGCGccCGGCGGGcGGAucuugACCGa -3' miRNA: 3'- -CAGGCGCc-GCCGCCC-CCUcca--UGGCc -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 67263 | 0.66 | 0.662978 |
Target: 5'- -cCCGUGGCaggagGGCGGgcaGGGAGGacaGCCGc -3' miRNA: 3'- caGGCGCCG-----CCGCC---CCCUCCa--UGGCc -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 187898 | 0.66 | 0.644531 |
Target: 5'- --aCG-GGCGGCGGGGGcAGGUcgAUCa- -3' miRNA: 3'- cagGCgCCGCCGCCCCC-UCCA--UGGcc -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 17772 | 0.66 | 0.662978 |
Target: 5'- -aCCGcCGGCGGCGGacGGucAGGUGaaGGa -3' miRNA: 3'- caGGC-GCCGCCGCCc-CC--UCCAUggCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 170347 | 0.66 | 0.644531 |
Target: 5'- --aCGUGGCGGCaGcGGuGGUACuCGGg -3' miRNA: 3'- cagGCGCCGCCGcCcCCuCCAUG-GCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 100711 | 0.66 | 0.671256 |
Target: 5'- -gCCGCGGCcgcugauggaggaGGCGGGGGGuucaugucGUcguCCGGg -3' miRNA: 3'- caGGCGCCG-------------CCGCCCCCUc-------CAu--GGCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 5654 | 0.66 | 0.672175 |
Target: 5'- -aUgGCGGCGGagGGuGGGGGGUcgagACaCGGg -3' miRNA: 3'- caGgCGCCGCCg-CC-CCCUCCA----UG-GCC- -5' |
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14284 | 5' | -65 | NC_003521.1 | + | 224025 | 0.66 | 0.672175 |
Target: 5'- -gCC-CGGCGGuCGGGGcGGGcGCCGu -3' miRNA: 3'- caGGcGCCGCC-GCCCCcUCCaUGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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