miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14284 5' -65 NC_003521.1 + 168546 0.69 0.462672
Target:  5'- --gCGCGGCGGCGGcgcuggcgggcugcGGGuaAGGUGgCGGc -3'
miRNA:   3'- cagGCGCCGCCGCC--------------CCC--UCCAUgGCC- -5'
14284 5' -65 NC_003521.1 + 98975 0.71 0.36332
Target:  5'- -aCgGCGGCgccuuuaggaGGCGucaGGGGAGGUACCGcGg -3'
miRNA:   3'- caGgCGCCG----------CCGC---CCCCUCCAUGGC-C- -5'
14284 5' -65 NC_003521.1 + 72993 0.71 0.40065
Target:  5'- -cCCGCGGCGGuCGugcccGGGGGGGU-CCa- -3'
miRNA:   3'- caGGCGCCGCC-GC-----CCCCUCCAuGGcc -5'
14284 5' -65 NC_003521.1 + 24336 0.7 0.408403
Target:  5'- aUCCGaugaauCGGCGGCGGGaccuGaAGGUGCUGGu -3'
miRNA:   3'- cAGGC------GCCGCCGCCCc---C-UCCAUGGCC- -5'
14284 5' -65 NC_003521.1 + 131034 0.7 0.439519
Target:  5'- cGUCCcgucuccugggcgGCGGCGGCGGGccucuGGAcgcGGUGgCGGc -3'
miRNA:   3'- -CAGG-------------CGCCGCCGCCC-----CCU---CCAUgGCC- -5'
14284 5' -65 NC_003521.1 + 18096 0.7 0.440334
Target:  5'- -gCCGCGG-GGaCGGaGGAGGUAgCGGu -3'
miRNA:   3'- caGGCGCCgCC-GCCcCCUCCAUgGCC- -5'
14284 5' -65 NC_003521.1 + 91570 0.7 0.440334
Target:  5'- gGUCCGCccacaaggGGCGGUGuguGGGucacGAGGUGCCGa -3'
miRNA:   3'- -CAGGCG--------CCGCCGC---CCC----CUCCAUGGCc -5'
14284 5' -65 NC_003521.1 + 91958 0.7 0.448537
Target:  5'- -cCCGUGGCGGCGaGGGcGGaacCCGGc -3'
miRNA:   3'- caGGCGCCGCCGCcCCCuCCau-GGCC- -5'
14284 5' -65 NC_003521.1 + 109275 0.7 0.456823
Target:  5'- -aCCGUGGUGGagacCGGGuaGGAGGUGCCc- -3'
miRNA:   3'- caGGCGCCGCC----GCCC--CCUCCAUGGcc -5'
14284 5' -65 NC_003521.1 + 225853 0.72 0.349078
Target:  5'- -cUCGUGGUGGUGcGGGcacAGGUGCCGGu -3'
miRNA:   3'- caGGCGCCGCCGC-CCCc--UCCAUGGCC- -5'
14284 5' -65 NC_003521.1 + 91354 0.72 0.31524
Target:  5'- gGUCgGgaGGaCGGUGGGGGAGGggGCCGa -3'
miRNA:   3'- -CAGgCg-CC-GCCGCCCCCUCCa-UGGCc -5'
14284 5' -65 NC_003521.1 + 98422 0.73 0.308777
Target:  5'- uGUCCgGUGGUGGCGGGGcGGGcGUACgGu -3'
miRNA:   3'- -CAGG-CGCCGCCGCCCC-CUC-CAUGgCc -5'
14284 5' -65 NC_003521.1 + 200296 0.76 0.195801
Target:  5'- uUCCGCGGCGGCGuGcGGcGGGccgGCCGGu -3'
miRNA:   3'- cAGGCGCCGCCGC-C-CCcUCCa--UGGCC- -5'
14284 5' -65 NC_003521.1 + 142773 0.74 0.239049
Target:  5'- cGUCCGCGGCGGCGucGucGGUGCCa- -3'
miRNA:   3'- -CAGGCGCCGCCGCccCcuCCAUGGcc -5'
14284 5' -65 NC_003521.1 + 31031 0.74 0.244319
Target:  5'- cGUUCGUGGUGGUGGGGGGuGGgaggACCa- -3'
miRNA:   3'- -CAGGCGCCGCCGCCCCCU-CCa---UGGcc -5'
14284 5' -65 NC_003521.1 + 92022 0.74 0.249685
Target:  5'- -gCgGCGGCGGCGGcGGuGGGU-CCGGg -3'
miRNA:   3'- caGgCGCCGCCGCC-CCcUCCAuGGCC- -5'
14284 5' -65 NC_003521.1 + 166890 0.74 0.266367
Target:  5'- aGUCCGCgGGCGcGCGGGGuAGGUgaacuGCCGc -3'
miRNA:   3'- -CAGGCG-CCGC-CGCCCCcUCCA-----UGGCc -5'
14284 5' -65 NC_003521.1 + 150545 0.73 0.296156
Target:  5'- gGUCCgGCGGUGGUGGugcGGGuGGUGgCGGc -3'
miRNA:   3'- -CAGG-CGCCGCCGCC---CCCuCCAUgGCC- -5'
14284 5' -65 NC_003521.1 + 120934 0.73 0.296156
Target:  5'- -cCCGCGGCGGCGgcuccggcgaGGGGcAGGggGCgGGg -3'
miRNA:   3'- caGGCGCCGCCGC----------CCCC-UCCa-UGgCC- -5'
14284 5' -65 NC_003521.1 + 168437 0.73 0.301785
Target:  5'- -gCCGCGGCGGCGGGcGugaagagcgugauGGGGcGCUGGu -3'
miRNA:   3'- caGGCGCCGCCGCCC-C-------------CUCCaUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.