miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14284 5' -65 NC_003521.1 + 7984 1.09 0.000935
Target:  5'- gGUCCGCGGCGGCGGGGGAGGUACCGGg -3'
miRNA:   3'- -CAGGCGCCGCCGCCCCCUCCAUGGCC- -5'
14284 5' -65 NC_003521.1 + 122665 0.8 0.102237
Target:  5'- cGUCUGCGGCGGUGGGGuGGcGUcGCCGGu -3'
miRNA:   3'- -CAGGCGCCGCCGCCCCcUC-CA-UGGCC- -5'
14284 5' -65 NC_003521.1 + 123179 0.8 0.105695
Target:  5'- -gCgGCGGCGGCGGGGGAccguaggccgcauacGGcGCCGGg -3'
miRNA:   3'- caGgCGCCGCCGCCCCCU---------------CCaUGGCC- -5'
14284 5' -65 NC_003521.1 + 155241 0.78 0.13886
Target:  5'- aGUCCGUGGUGGUGGuGGGGGGcGgCGGc -3'
miRNA:   3'- -CAGGCGCCGCCGCC-CCCUCCaUgGCC- -5'
14284 5' -65 NC_003521.1 + 23571 0.78 0.148878
Target:  5'- cGUCCGUcauGGUGGUGGGcgcGGGGGUGCUGGc -3'
miRNA:   3'- -CAGGCG---CCGCCGCCC---CCUCCAUGGCC- -5'
14284 5' -65 NC_003521.1 + 55912 0.78 0.152361
Target:  5'- cUCCGaCGGCGGCGGcaacGGGGGUGCCa- -3'
miRNA:   3'- cAGGC-GCCGCCGCCc---CCUCCAUGGcc -5'
14284 5' -65 NC_003521.1 + 155330 0.77 0.170906
Target:  5'- -aCCGCGGguccCGGCGGGGGcgcGGGcACCGGc -3'
miRNA:   3'- caGGCGCC----GCCGCCCCC---UCCaUGGCC- -5'
14284 5' -65 NC_003521.1 + 23093 0.76 0.18298
Target:  5'- cGUCCGUGGCcgGGCGGGGG----GCCGGg -3'
miRNA:   3'- -CAGGCGCCG--CCGCCCCCuccaUGGCC- -5'
14284 5' -65 NC_003521.1 + 70376 0.76 0.187169
Target:  5'- -gCCGCaGGCGGCGGuaGAGGUAgCGGg -3'
miRNA:   3'- caGGCG-CCGCCGCCccCUCCAUgGCC- -5'
14284 5' -65 NC_003521.1 + 155183 0.76 0.191443
Target:  5'- -gCCGCGGCuGCcggGGGGGAGGUGCaCGa -3'
miRNA:   3'- caGGCGCCGcCG---CCCCCUCCAUG-GCc -5'
14284 5' -65 NC_003521.1 + 240617 0.76 0.195801
Target:  5'- uUCCGCGGCGGCGuGcGGcGGGccgGCCGGu -3'
miRNA:   3'- cAGGCGCCGCCGC-C-CCcUCCa--UGGCC- -5'
14284 5' -65 NC_003521.1 + 200296 0.76 0.195801
Target:  5'- uUCCGCGGCGGCGuGcGGcGGGccgGCCGGu -3'
miRNA:   3'- cAGGCGCCGCCGC-C-CCcUCCa--UGGCC- -5'
14284 5' -65 NC_003521.1 + 68 0.76 0.195801
Target:  5'- uUCCGCGGCGGCGuGcGGcGGGccgGCCGGu -3'
miRNA:   3'- cAGGCGCCGCCGC-C-CCcUCCa--UGGCC- -5'
14284 5' -65 NC_003521.1 + 148516 0.75 0.226789
Target:  5'- aUCCGggaCGGgGGUGGGGGAGGguuuuaccugacgACCGGc -3'
miRNA:   3'- cAGGC---GCCgCCGCCCCCUCCa------------UGGCC- -5'
14284 5' -65 NC_003521.1 + 186653 0.75 0.228795
Target:  5'- cGUCgCGCGGCGGUGGcGGAGGcGgCGGc -3'
miRNA:   3'- -CAG-GCGCCGCCGCCcCCUCCaUgGCC- -5'
14284 5' -65 NC_003521.1 + 142773 0.74 0.239049
Target:  5'- cGUCCGCGGCGGCGucGucGGUGCCa- -3'
miRNA:   3'- -CAGGCGCCGCCGCccCcuCCAUGGcc -5'
14284 5' -65 NC_003521.1 + 31031 0.74 0.244319
Target:  5'- cGUUCGUGGUGGUGGGGGGuGGgaggACCa- -3'
miRNA:   3'- -CAGGCGCCGCCGCCCCCU-CCa---UGGcc -5'
14284 5' -65 NC_003521.1 + 92022 0.74 0.249685
Target:  5'- -gCgGCGGCGGCGGcGGuGGGU-CCGGg -3'
miRNA:   3'- caGgCGCCGCCGCC-CCcUCCAuGGCC- -5'
14284 5' -65 NC_003521.1 + 69706 0.74 0.255148
Target:  5'- uGUCgGUGGCGGCGGcccuGAGGUACgCGGu -3'
miRNA:   3'- -CAGgCGCCGCCGCCcc--CUCCAUG-GCC- -5'
14284 5' -65 NC_003521.1 + 166890 0.74 0.266367
Target:  5'- aGUCCGCgGGCGcGCGGGGuAGGUgaacuGCCGc -3'
miRNA:   3'- -CAGGCG-CCGC-CGCCCCcUCCA-----UGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.