miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14288 3' -54.3 NC_003521.1 + 53162 0.66 0.987083
Target:  5'- gUCGGGgACgGCGGcgaGGAGGUcgGCGACg- -3'
miRNA:   3'- -AGCUUgUG-CGCCa--UCUCCA--CGCUGac -5'
14288 3' -54.3 NC_003521.1 + 69091 0.66 0.987083
Target:  5'- aUGGugGCGUGGUGGuacuuGGUGUGcACg- -3'
miRNA:   3'- aGCUugUGCGCCAUCu----CCACGC-UGac -5'
14288 3' -54.3 NC_003521.1 + 36744 0.66 0.987083
Target:  5'- -gGuGCACGUGGcccacgacguGuGGUGCGACUGc -3'
miRNA:   3'- agCuUGUGCGCCau--------CuCCACGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 120327 0.66 0.985485
Target:  5'- aUCGAgACAUGCGGUGGccGcUGCuGCUGc -3'
miRNA:   3'- -AGCU-UGUGCGCCAUCucC-ACGcUGAC- -5'
14288 3' -54.3 NC_003521.1 + 121150 0.66 0.985485
Target:  5'- aUGAGCAuguCGCGGUcgaagaagaAGAGG-GCGGCc- -3'
miRNA:   3'- aGCUUGU---GCGCCA---------UCUCCaCGCUGac -5'
14288 3' -54.3 NC_003521.1 + 151476 0.66 0.985485
Target:  5'- -gGGGCAUGUGcGUGcuuGGGUGCGACa- -3'
miRNA:   3'- agCUUGUGCGC-CAUc--UCCACGCUGac -5'
14288 3' -54.3 NC_003521.1 + 144117 0.66 0.985485
Target:  5'- cUGGACcgcCGCGGccuggacGAGGUGCGcCUGg -3'
miRNA:   3'- aGCUUGu--GCGCCau-----CUCCACGCuGAC- -5'
14288 3' -54.3 NC_003521.1 + 137957 0.66 0.985317
Target:  5'- cCGAGCGCGUguGGUAugccgacGuGGUGCG-CUGu -3'
miRNA:   3'- aGCUUGUGCG--CCAU-------CuCCACGCuGAC- -5'
14288 3' -54.3 NC_003521.1 + 179298 0.66 0.985317
Target:  5'- gCGAGCGucccaucucCGUGGUAGAagGGUggccacgcgaguaGCGGCUGa -3'
miRNA:   3'- aGCUUGU---------GCGCCAUCU--CCA-------------CGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 87584 0.66 0.984456
Target:  5'- gCGGgugcGCACGCGGacgaaggccguguugUAGcAGGUGUGGCa- -3'
miRNA:   3'- aGCU----UGUGCGCC---------------AUC-UCCACGCUGac -5'
14288 3' -54.3 NC_003521.1 + 15540 0.66 0.984456
Target:  5'- gCGAACGCGCuGGgaagAGGGGgcgcccaccuucacGCGACa- -3'
miRNA:   3'- aGCUUGUGCG-CCa---UCUCCa-------------CGCUGac -5'
14288 3' -54.3 NC_003521.1 + 170190 0.66 0.98374
Target:  5'- gCGGugGUGcCGGUGGAGGUaGUGGCa- -3'
miRNA:   3'- aGCUugUGC-GCCAUCUCCA-CGCUGac -5'
14288 3' -54.3 NC_003521.1 + 115460 0.66 0.981842
Target:  5'- gCGGACG-GUGGUAGuGGUGCaggGACa- -3'
miRNA:   3'- aGCUUGUgCGCCAUCuCCACG---CUGac -5'
14288 3' -54.3 NC_003521.1 + 62293 0.66 0.979781
Target:  5'- aCGAcgGCACGCGGUAcGAGaUGUGcaucaugaaGCUGg -3'
miRNA:   3'- aGCU--UGUGCGCCAU-CUCcACGC---------UGAC- -5'
14288 3' -54.3 NC_003521.1 + 166272 0.66 0.979781
Target:  5'- aCGGGCACGCGcac--GGcGCGGCUGg -3'
miRNA:   3'- aGCUUGUGCGCcaucuCCaCGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 78593 0.66 0.979781
Target:  5'- gUGAGCGuCGCGGgaagcggAGAGGcacCGACUGc -3'
miRNA:   3'- aGCUUGU-GCGCCa------UCUCCac-GCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 199459 0.67 0.977551
Target:  5'- aCGAcugGCGCGCGu---AGGUGCGACg- -3'
miRNA:   3'- aGCU---UGUGCGCcaucUCCACGCUGac -5'
14288 3' -54.3 NC_003521.1 + 137040 0.67 0.977551
Target:  5'- -gGAGCACgGCGGc-GAGGUGCG-Cg- -3'
miRNA:   3'- agCUUGUG-CGCCauCUCCACGCuGac -5'
14288 3' -54.3 NC_003521.1 + 168563 0.67 0.977551
Target:  5'- gCGGGC-UGCGGguaAGGUgGCGGCUGa -3'
miRNA:   3'- aGCUUGuGCGCCaucUCCA-CGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 160495 0.67 0.977551
Target:  5'- aCGGACACagcagaccgcgGCGGgaggAGGGG-GCGGCa- -3'
miRNA:   3'- aGCUUGUG-----------CGCCa---UCUCCaCGCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.