miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14290 3' -59.9 NC_003521.1 + 198209 0.72 0.547466
Target:  5'- uGGCGGcgaCGG--CGCCGCcgGCGGCCg -3'
miRNA:   3'- -CUGCCug-GCCaaGCGGCGaaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 43535 0.72 0.556862
Target:  5'- aGACGGccgaGCCGaGagaCGCCGCgacagagGCGGCCg -3'
miRNA:   3'- -CUGCC----UGGC-Caa-GCGGCGaa-----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 192214 0.71 0.565358
Target:  5'- cGGCGGACCcuGUUucuugcgacccggCGCCGCgggaggGUGGCCg -3'
miRNA:   3'- -CUGCCUGGc-CAA-------------GCGGCGaa----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 197330 0.71 0.566304
Target:  5'- uGACGGAU--GUUgGCCGCc-GCGGCCa -3'
miRNA:   3'- -CUGCCUGgcCAAgCGGCGaaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 124042 0.71 0.566304
Target:  5'- aGACGG-CCaGcgUGCCGCggcgGCGGCCc -3'
miRNA:   3'- -CUGCCuGGcCaaGCGGCGaa--CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 53501 0.71 0.575787
Target:  5'- cGCGaGCCGGUgCGCUGUUguccgacGCGGCCg -3'
miRNA:   3'- cUGCcUGGCCAaGCGGCGAa------CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 43482 0.71 0.575787
Target:  5'- cGGCGG-CCGuGcUgGCCGCg-GCGGCCa -3'
miRNA:   3'- -CUGCCuGGC-CaAgCGGCGaaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 183374 0.71 0.575787
Target:  5'- --gGGGCCGGUU--CCGCUuuUGCGGCg -3'
miRNA:   3'- cugCCUGGCCAAgcGGCGA--ACGCCGg -5'
14290 3' -59.9 NC_003521.1 + 208597 0.71 0.575787
Target:  5'- aGugGGACCuGGccgUCuggGCCGCgUUGCGaGCCa -3'
miRNA:   3'- -CugCCUGG-CCa--AG---CGGCG-AACGC-CGG- -5'
14290 3' -59.9 NC_003521.1 + 196960 0.71 0.575787
Target:  5'- cGACGGcccgggagccgGCCGGggCGCCugugacggGCccGCGGCCg -3'
miRNA:   3'- -CUGCC-----------UGGCCaaGCGG--------CGaaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 171043 0.71 0.581494
Target:  5'- cGACGG-CCGcucccucgUCGCCGUgguaugccgucagUGCGGCCa -3'
miRNA:   3'- -CUGCCuGGCca------AGCGGCGa------------ACGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 34456 0.71 0.585305
Target:  5'- uGCGGGCCuGGgggUCGUCGCc-GCaGGCCa -3'
miRNA:   3'- cUGCCUGG-CCa--AGCGGCGaaCG-CCGG- -5'
14290 3' -59.9 NC_003521.1 + 228054 0.71 0.594853
Target:  5'- aGCGGAgCGGUUCGgUGCgucUG-GGCCa -3'
miRNA:   3'- cUGCCUgGCCAAGCgGCGa--ACgCCGG- -5'
14290 3' -59.9 NC_003521.1 + 143213 0.71 0.604425
Target:  5'- uGGCcaGGCCGGagccgUCGCCGUgucuucucgGCGGCCa -3'
miRNA:   3'- -CUGc-CUGGCCa----AGCGGCGaa-------CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 105379 0.71 0.604425
Target:  5'- gGGCGGACCgacGGUUC-CCGCggGC-GCCa -3'
miRNA:   3'- -CUGCCUGG---CCAAGcGGCGaaCGcCGG- -5'
14290 3' -59.9 NC_003521.1 + 157969 0.71 0.604425
Target:  5'- cGACGGcGCUGGUagcgacgcCGCCGCccGCGGCg -3'
miRNA:   3'- -CUGCC-UGGCCAa-------GCGGCGaaCGCCGg -5'
14290 3' -59.9 NC_003521.1 + 35027 0.71 0.613055
Target:  5'- cGGCGGACgCGGUUgGgCaCGCUcaugccgUGCGGCg -3'
miRNA:   3'- -CUGCCUG-GCCAAgC-G-GCGA-------ACGCCGg -5'
14290 3' -59.9 NC_003521.1 + 211055 0.71 0.614015
Target:  5'- uGGCuGACCucGUUCGUCGCUcGCGGCg -3'
miRNA:   3'- -CUGcCUGGc-CAAGCGGCGAaCGCCGg -5'
14290 3' -59.9 NC_003521.1 + 19983 0.71 0.614015
Target:  5'- --gGGACUGuGUUCGUgGCUgGCGGCg -3'
miRNA:   3'- cugCCUGGC-CAAGCGgCGAaCGCCGg -5'
14290 3' -59.9 NC_003521.1 + 166099 0.7 0.623617
Target:  5'- aGCGGGCCGGcaggUUCacgcggGCCuGCUUcaggGCGGCCg -3'
miRNA:   3'- cUGCCUGGCC----AAG------CGG-CGAA----CGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.