miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14302 3' -59.9 NC_003521.1 + 4155 1.08 0.002369
Target:  5'- uCUCCCCUUCCCCAGGACCAGCCUACGa -3'
miRNA:   3'- -GAGGGGAAGGGGUCCUGGUCGGAUGC- -5'
14302 3' -59.9 NC_003521.1 + 125076 0.78 0.241899
Target:  5'- aUCUCCUUCCCCgAGGACCuGGCCcGCa -3'
miRNA:   3'- gAGGGGAAGGGG-UCCUGG-UCGGaUGc -5'
14302 3' -59.9 NC_003521.1 + 171595 0.74 0.414022
Target:  5'- uCUCCCCgUCUCuCAGaGACCaccacAGCCUGCGg -3'
miRNA:   3'- -GAGGGGaAGGG-GUC-CUGG-----UCGGAUGC- -5'
14302 3' -59.9 NC_003521.1 + 120268 0.72 0.51021
Target:  5'- aUCCCCgggcgcucCCCCGGGACCgccGGCCgcCGa -3'
miRNA:   3'- gAGGGGaa------GGGGUCCUGG---UCGGauGC- -5'
14302 3' -59.9 NC_003521.1 + 145267 0.71 0.566465
Target:  5'- cCUCCUCggCCUCGGcGGCCAGCUcGCGc -3'
miRNA:   3'- -GAGGGGaaGGGGUC-CUGGUCGGaUGC- -5'
14302 3' -59.9 NC_003521.1 + 988 0.7 0.604853
Target:  5'- gUCUgC-UCCCguGGGCCGGCCgUACGg -3'
miRNA:   3'- gAGGgGaAGGGguCCUGGUCGG-AUGC- -5'
14302 3' -59.9 NC_003521.1 + 66287 0.69 0.662841
Target:  5'- aCUCCgCCUUCCCCAagaccacuaauGGAaCCAGC--GCGg -3'
miRNA:   3'- -GAGG-GGAAGGGGU-----------CCU-GGUCGgaUGC- -5'
14302 3' -59.9 NC_003521.1 + 236589 0.69 0.662841
Target:  5'- cCUCCCCgUCucgguccuccuCCCGGGGCCGGCUU-Ca -3'
miRNA:   3'- -GAGGGGaAG-----------GGGUCCUGGUCGGAuGc -5'
14302 3' -59.9 NC_003521.1 + 201378 0.69 0.68111
Target:  5'- gCUgCCg-UCCCCGGGAgCCAcggcgccGCCUACGg -3'
miRNA:   3'- -GAgGGgaAGGGGUCCU-GGU-------CGGAUGC- -5'
14302 3' -59.9 NC_003521.1 + 1150 0.69 0.68111
Target:  5'- gCUgCCg-UCCCCGGGAgCCAcggcgccGCCUACGg -3'
miRNA:   3'- -GAgGGgaAGGGGUCCU-GGU-------CGGAUGC- -5'
14302 3' -59.9 NC_003521.1 + 62771 0.69 0.682068
Target:  5'- cCUUCCCgUCCCC---ACCAGCCUgACGg -3'
miRNA:   3'- -GAGGGGaAGGGGuccUGGUCGGA-UGC- -5'
14302 3' -59.9 NC_003521.1 + 107058 0.69 0.69163
Target:  5'- aCUCCgCCgcgUCCCCGGaaucGCCGGgCCUGCc -3'
miRNA:   3'- -GAGG-GGa--AGGGGUCc---UGGUC-GGAUGc -5'
14302 3' -59.9 NC_003521.1 + 217591 0.69 0.701147
Target:  5'- -aCCCCggguccgCCCC-GGACCAGCagggGCGu -3'
miRNA:   3'- gaGGGGaa-----GGGGuCCUGGUCGga--UGC- -5'
14302 3' -59.9 NC_003521.1 + 215977 0.69 0.701147
Target:  5'- gCUUCCUUUUCUgAGGugCGGCCaGCGc -3'
miRNA:   3'- -GAGGGGAAGGGgUCCugGUCGGaUGC- -5'
14302 3' -59.9 NC_003521.1 + 149472 0.69 0.709669
Target:  5'- cCUCCCCcaccgUCCUCccGACCAgcaccucGCCUGCGc -3'
miRNA:   3'- -GAGGGGa----AGGGGucCUGGU-------CGGAUGC- -5'
14302 3' -59.9 NC_003521.1 + 68498 0.68 0.720019
Target:  5'- cCUCaCCCgUCCgCCGcGACCGGCCUgGCGc -3'
miRNA:   3'- -GAG-GGGaAGG-GGUcCUGGUCGGA-UGC- -5'
14302 3' -59.9 NC_003521.1 + 112477 0.68 0.729358
Target:  5'- uUCUUCUUCCCCGuGGGCCuguaCCUGCc -3'
miRNA:   3'- gAGGGGAAGGGGU-CCUGGuc--GGAUGc -5'
14302 3' -59.9 NC_003521.1 + 140694 0.68 0.738622
Target:  5'- ---gCCUUCCCgCAGGaccGCCAGCC-GCGg -3'
miRNA:   3'- gaggGGAAGGG-GUCC---UGGUCGGaUGC- -5'
14302 3' -59.9 NC_003521.1 + 200488 0.68 0.738622
Target:  5'- -cCCCCaccCCCCGGGACCcGCa-GCGg -3'
miRNA:   3'- gaGGGGaa-GGGGUCCUGGuCGgaUGC- -5'
14302 3' -59.9 NC_003521.1 + 260 0.68 0.738622
Target:  5'- -cCCCCaccCCCCGGGACCcGCa-GCGg -3'
miRNA:   3'- gaGGGGaa-GGGGUCCUGGuCGgaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.