miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14302 3' -59.9 NC_003521.1 + 114043 0.66 0.856158
Target:  5'- gCUCUCC-UCCUC--GACCAGCCUgaACGu -3'
miRNA:   3'- -GAGGGGaAGGGGucCUGGUCGGA--UGC- -5'
14302 3' -59.9 NC_003521.1 + 142533 0.67 0.783541
Target:  5'- cCUCCUCUUCCCUgAGGAgugaCGGCUUGuCGc -3'
miRNA:   3'- -GAGGGGAAGGGG-UCCUg---GUCGGAU-GC- -5'
14302 3' -59.9 NC_003521.1 + 153069 0.67 0.79219
Target:  5'- cCUCCUCcgCCgCCGGGGCCcgGGCCgggGCc -3'
miRNA:   3'- -GAGGGGaaGG-GGUCCUGG--UCGGa--UGc -5'
14302 3' -59.9 NC_003521.1 + 192572 0.67 0.79219
Target:  5'- uCUCuCCCUUCCCCcgcGGAacgCAGgCUGCu -3'
miRNA:   3'- -GAG-GGGAAGGGGu--CCUg--GUCgGAUGc -5'
14302 3' -59.9 NC_003521.1 + 148533 0.67 0.817337
Target:  5'- cCUCCcgcgCCUUCCCCgAGGACgCGGUUUgaACGc -3'
miRNA:   3'- -GAGG----GGAAGGGG-UCCUG-GUCGGA--UGC- -5'
14302 3' -59.9 NC_003521.1 + 90818 0.66 0.833362
Target:  5'- -cCCCCUUCCCCGGGgaugggaggcACCcccaauagAGCaUGCGc -3'
miRNA:   3'- gaGGGGAAGGGGUCC----------UGG--------UCGgAUGC- -5'
14302 3' -59.9 NC_003521.1 + 201215 0.66 0.841132
Target:  5'- gUCUgC-UCCCgCuGGGCCGGCCgUACGg -3'
miRNA:   3'- gAGGgGaAGGG-GuCCUGGUCGG-AUGC- -5'
14302 3' -59.9 NC_003521.1 + 170453 0.66 0.841132
Target:  5'- gUCCCCUcgcgCCCCAGucaugucgccGACUAGCgCgGCGa -3'
miRNA:   3'- gAGGGGAa---GGGGUC----------CUGGUCG-GaUGC- -5'
14302 3' -59.9 NC_003521.1 + 159806 0.66 0.848733
Target:  5'- aCUCCCgagUUCgUCAcGGACCGGCCgugagGCGc -3'
miRNA:   3'- -GAGGGg--AAGgGGU-CCUGGUCGGa----UGC- -5'
14302 3' -59.9 NC_003521.1 + 229050 0.67 0.775652
Target:  5'- aCUCCUCgcagcagaugagccgUCCCCAGGGCgAGUCggGCc -3'
miRNA:   3'- -GAGGGGa--------------AGGGGUCCUGgUCGGa-UGc -5'
14302 3' -59.9 NC_003521.1 + 139072 0.68 0.765884
Target:  5'- aUCaCCCUggCCUCGGGGCUGGaCUACGu -3'
miRNA:   3'- gAG-GGGAa-GGGGUCCUGGUCgGAUGC- -5'
14302 3' -59.9 NC_003521.1 + 61766 0.68 0.765884
Target:  5'- uUCCCCgUCaCCGGGACC-GCCgcCGg -3'
miRNA:   3'- gAGGGGaAGgGGUCCUGGuCGGauGC- -5'
14302 3' -59.9 NC_003521.1 + 171595 0.74 0.414022
Target:  5'- uCUCCCCgUCUCuCAGaGACCaccacAGCCUGCGg -3'
miRNA:   3'- -GAGGGGaAGGG-GUC-CUGG-----UCGGAUGC- -5'
14302 3' -59.9 NC_003521.1 + 120268 0.72 0.51021
Target:  5'- aUCCCCgggcgcucCCCCGGGACCgccGGCCgcCGa -3'
miRNA:   3'- gAGGGGaa------GGGGUCCUGG---UCGGauGC- -5'
14302 3' -59.9 NC_003521.1 + 145267 0.71 0.566465
Target:  5'- cCUCCUCggCCUCGGcGGCCAGCUcGCGc -3'
miRNA:   3'- -GAGGGGaaGGGGUC-CUGGUCGGaUGC- -5'
14302 3' -59.9 NC_003521.1 + 201378 0.69 0.68111
Target:  5'- gCUgCCg-UCCCCGGGAgCCAcggcgccGCCUACGg -3'
miRNA:   3'- -GAgGGgaAGGGGUCCU-GGU-------CGGAUGC- -5'
14302 3' -59.9 NC_003521.1 + 62771 0.69 0.682068
Target:  5'- cCUUCCCgUCCCC---ACCAGCCUgACGg -3'
miRNA:   3'- -GAGGGGaAGGGGuccUGGUCGGA-UGC- -5'
14302 3' -59.9 NC_003521.1 + 217591 0.69 0.701147
Target:  5'- -aCCCCggguccgCCCC-GGACCAGCagggGCGu -3'
miRNA:   3'- gaGGGGaa-----GGGGuCCUGGUCGga--UGC- -5'
14302 3' -59.9 NC_003521.1 + 68498 0.68 0.720019
Target:  5'- cCUCaCCCgUCCgCCGcGACCGGCCUgGCGc -3'
miRNA:   3'- -GAG-GGGaAGG-GGUcCUGGUCGGA-UGC- -5'
14302 3' -59.9 NC_003521.1 + 200488 0.68 0.738622
Target:  5'- -cCCCCaccCCCCGGGACCcGCa-GCGg -3'
miRNA:   3'- gaGGGGaa-GGGGUCCUGGuCGgaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.