miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14302 3' -59.9 NC_003521.1 + 260 0.68 0.738622
Target:  5'- -cCCCCaccCCCCGGGACCcGCa-GCGg -3'
miRNA:   3'- gaGGGGaa-GGGGUCCUGGuCGgaUGC- -5'
14302 3' -59.9 NC_003521.1 + 988 0.7 0.604853
Target:  5'- gUCUgC-UCCCguGGGCCGGCCgUACGg -3'
miRNA:   3'- gAGGgGaAGGGguCCUGGUCGG-AUGC- -5'
14302 3' -59.9 NC_003521.1 + 1150 0.69 0.68111
Target:  5'- gCUgCCg-UCCCCGGGAgCCAcggcgccGCCUACGg -3'
miRNA:   3'- -GAgGGgaAGGGGUCCU-GGU-------CGGAUGC- -5'
14302 3' -59.9 NC_003521.1 + 4155 1.08 0.002369
Target:  5'- uCUCCCCUUCCCCAGGACCAGCCUACGa -3'
miRNA:   3'- -GAGGGGAAGGGGUCCUGGUCGGAUGC- -5'
14302 3' -59.9 NC_003521.1 + 35605 0.66 0.859077
Target:  5'- gUCCCCUgauccgccugccggCCCU-GGACgGGCCUcCGg -3'
miRNA:   3'- gAGGGGAa-------------GGGGuCCUGgUCGGAuGC- -5'
14302 3' -59.9 NC_003521.1 + 42518 0.66 0.833362
Target:  5'- aUCCCCcacCCCCAGGGaacuCCAGUCa--- -3'
miRNA:   3'- gAGGGGaa-GGGGUCCU----GGUCGGaugc -5'
14302 3' -59.9 NC_003521.1 + 45186 0.68 0.754175
Target:  5'- aCUCCCUggCCUCGGagcugcagcaacgcGACCAGCUgGCGg -3'
miRNA:   3'- -GAGGGGaaGGGGUC--------------CUGGUCGGaUGC- -5'
14302 3' -59.9 NC_003521.1 + 60783 0.66 0.841132
Target:  5'- cCUCCUCUUCCCauuucuACCAGCCgcuggACa -3'
miRNA:   3'- -GAGGGGAAGGGgucc--UGGUCGGa----UGc -5'
14302 3' -59.9 NC_003521.1 + 61766 0.68 0.765884
Target:  5'- uUCCCCgUCaCCGGGACC-GCCgcCGg -3'
miRNA:   3'- gAGGGGaAGgGGUCCUGGuCGGauGC- -5'
14302 3' -59.9 NC_003521.1 + 62771 0.69 0.682068
Target:  5'- cCUUCCCgUCCCC---ACCAGCCUgACGg -3'
miRNA:   3'- -GAGGGGaAGGGGuccUGGUCGGA-UGC- -5'
14302 3' -59.9 NC_003521.1 + 66287 0.69 0.662841
Target:  5'- aCUCCgCCUUCCCCAagaccacuaauGGAaCCAGC--GCGg -3'
miRNA:   3'- -GAGG-GGAAGGGGU-----------CCU-GGUCGgaUGC- -5'
14302 3' -59.9 NC_003521.1 + 68498 0.68 0.720019
Target:  5'- cCUCaCCCgUCCgCCGcGACCGGCCUgGCGc -3'
miRNA:   3'- -GAG-GGGaAGG-GGUcCUGGUCGGA-UGC- -5'
14302 3' -59.9 NC_003521.1 + 79309 0.66 0.841132
Target:  5'- uCUUCUCUUUCCCAGGAagagCAGCaaGCa -3'
miRNA:   3'- -GAGGGGAAGGGGUCCUg---GUCGgaUGc -5'
14302 3' -59.9 NC_003521.1 + 89232 0.66 0.841132
Target:  5'- cCUCCCaagauUUCCCCAucGGGCguGCUgacGCGg -3'
miRNA:   3'- -GAGGGg----AAGGGGU--CCUGguCGGa--UGC- -5'
14302 3' -59.9 NC_003521.1 + 90818 0.66 0.833362
Target:  5'- -cCCCCUUCCCCGGGgaugggaggcACCcccaauagAGCaUGCGc -3'
miRNA:   3'- gaGGGGAAGGGGUCC----------UGG--------UCGgAUGC- -5'
14302 3' -59.9 NC_003521.1 + 107058 0.69 0.69163
Target:  5'- aCUCCgCCgcgUCCCCGGaaucGCCGGgCCUGCc -3'
miRNA:   3'- -GAGG-GGa--AGGGGUCc---UGGUC-GGAUGc -5'
14302 3' -59.9 NC_003521.1 + 112477 0.68 0.729358
Target:  5'- uUCUUCUUCCCCGuGGGCCuguaCCUGCc -3'
miRNA:   3'- gAGGGGAAGGGGU-CCUGGuc--GGAUGc -5'
14302 3' -59.9 NC_003521.1 + 114043 0.66 0.856158
Target:  5'- gCUCUCC-UCCUC--GACCAGCCUgaACGu -3'
miRNA:   3'- -GAGGGGaAGGGGucCUGGUCGGA--UGC- -5'
14302 3' -59.9 NC_003521.1 + 119315 0.67 0.800711
Target:  5'- --gUCCUUCCaCgAGGacguGCCGGCCUGCa -3'
miRNA:   3'- gagGGGAAGG-GgUCC----UGGUCGGAUGc -5'
14302 3' -59.9 NC_003521.1 + 120268 0.72 0.51021
Target:  5'- aUCCCCgggcgcucCCCCGGGACCgccGGCCgcCGa -3'
miRNA:   3'- gAGGGGaa------GGGGUCCUGG---UCGGauGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.