miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 3' -53.8 NC_003521.1 + 100265 0.67 0.974745
Target:  5'- aGCuGUCGCCgCCGCcgCcgCAGcAGCCa -3'
miRNA:   3'- gCG-CAGCGG-GGCGuaGa-GUUuUUGGc -5'
14308 3' -53.8 NC_003521.1 + 185693 0.67 0.982893
Target:  5'- cCGCGcCGCgaccuuauuugaggUCCGCGUCUCGccGGGugCGg -3'
miRNA:   3'- -GCGCaGCG--------------GGGCGUAGAGU--UUUugGC- -5'
14308 3' -53.8 NC_003521.1 + 122683 0.67 0.981124
Target:  5'- gGCGUCGCCggugaucauggGCGUCUCGgcGGGGCUGg -3'
miRNA:   3'- gCGCAGCGGgg---------CGUAGAGU--UUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 166003 0.67 0.978106
Target:  5'- aCGcCGUCGCgcucggcgccguccgUCCGCGUCUCGccgcuACCGc -3'
miRNA:   3'- -GC-GCAGCG---------------GGGCGUAGAGUuuu--UGGC- -5'
14308 3' -53.8 NC_003521.1 + 95125 0.67 0.97944
Target:  5'- aGCGUgGCCuugaagagcuCCGCGUCgugCGAGAGCa- -3'
miRNA:   3'- gCGCAgCGG----------GGCGUAGa--GUUUUUGgc -5'
14308 3' -53.8 NC_003521.1 + 107633 0.67 0.97944
Target:  5'- cCGCgGUCGUCCCG-AUCgCcGAGGCCGc -3'
miRNA:   3'- -GCG-CAGCGGGGCgUAGaGuUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 224254 0.67 0.983454
Target:  5'- cCG-GUCGCCUCGCAggcgcagcuuUCUCGcuuaaAAAGCCc -3'
miRNA:   3'- -GCgCAGCGGGGCGU----------AGAGU-----UUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 45654 0.67 0.97944
Target:  5'- cCGCGggguccggCGCacaCCCGCua-UCAGGGGCCGg -3'
miRNA:   3'- -GCGCa-------GCG---GGGCGuagAGUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 57415 0.67 0.97944
Target:  5'- uGCgGUCGCCCaC-CGUCUCGcgGACgGg -3'
miRNA:   3'- gCG-CAGCGGG-GcGUAGAGUuuUUGgC- -5'
14308 3' -53.8 NC_003521.1 + 150514 0.67 0.977181
Target:  5'- gGCGggGCCCUGCuaggagCGGGAGCCGu -3'
miRNA:   3'- gCGCagCGGGGCGuaga--GUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 214533 0.67 0.983454
Target:  5'- gCGCGUgGCCCUGgCcuggcCUCG-AGACCGg -3'
miRNA:   3'- -GCGCAgCGGGGC-Gua---GAGUuUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 30234 0.67 0.977181
Target:  5'- gGCGUCGCgCUGCAggUCcgcgCGGuuGCCGu -3'
miRNA:   3'- gCGCAGCGgGGCGU--AGa---GUUuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 80277 0.67 0.983454
Target:  5'- aGUaUCGCgCCGCGUCUCugucuCCGc -3'
miRNA:   3'- gCGcAGCGgGGCGUAGAGuuuuuGGC- -5'
14308 3' -53.8 NC_003521.1 + 169470 0.67 0.981528
Target:  5'- -uCGUCGCCaggCGCGUCgUCGuuGGCCa -3'
miRNA:   3'- gcGCAGCGGg--GCGUAG-AGUuuUUGGc -5'
14308 3' -53.8 NC_003521.1 + 171946 0.67 0.97944
Target:  5'- cCGC-UCGCCCCuCAUCacaagagguaCAGGAACCGu -3'
miRNA:   3'- -GCGcAGCGGGGcGUAGa---------GUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 118018 0.67 0.97944
Target:  5'- gCGUGUCGCUgCCGCGggaCUCGGu-GCUGg -3'
miRNA:   3'- -GCGCAGCGG-GGCGUa--GAGUUuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 80 0.68 0.963098
Target:  5'- gCGUGUCGCUugCCGCGggcgugCagGGAGGCCGa -3'
miRNA:   3'- -GCGCAGCGG--GGCGUa-----GagUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 123474 0.68 0.959681
Target:  5'- gGCGUCaGCUCCGUGUC-CGuc-GCCGg -3'
miRNA:   3'- gCGCAG-CGGGGCGUAGaGUuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 28773 0.68 0.963098
Target:  5'- uGUGUcguuucucuaugCGCCCCGCGcccUCUCAu--GCCa -3'
miRNA:   3'- gCGCA------------GCGGGGCGU---AGAGUuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 152775 0.68 0.959681
Target:  5'- gGCGUCGCCUccugcgccuugCGCAccgcCUCGGucACCGg -3'
miRNA:   3'- gCGCAGCGGG-----------GCGUa---GAGUUuuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.