miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 3' -53.8 NC_003521.1 + 167313 0.68 0.956053
Target:  5'- gGCGUCGCcgaCCUGCuUCUCGAAGcAgCGg -3'
miRNA:   3'- gCGCAGCG---GGGCGuAGAGUUUU-UgGC- -5'
14308 3' -53.8 NC_003521.1 + 117101 0.68 0.956053
Target:  5'- aGCGgacgaggcCGCCuCCGCcgCUCAGccGCCGc -3'
miRNA:   3'- gCGCa-------GCGG-GGCGuaGAGUUuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 60875 0.68 0.956053
Target:  5'- gGUGUgGUgCCGCAguUCUCGGAGAUCu -3'
miRNA:   3'- gCGCAgCGgGGCGU--AGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 140131 0.68 0.956053
Target:  5'- cCGCGgcggCGCCuCCGCAUCagCAuc-ACCa -3'
miRNA:   3'- -GCGCa---GCGG-GGCGUAGa-GUuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 212864 0.68 0.956053
Target:  5'- aGCGcCGCCUgGCGUUUCu---ACCGc -3'
miRNA:   3'- gCGCaGCGGGgCGUAGAGuuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 32996 0.68 0.956053
Target:  5'- gGCGgaugaaGCCCCGCAggcUCUCG---GCCa -3'
miRNA:   3'- gCGCag----CGGGGCGU---AGAGUuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 52641 0.68 0.959681
Target:  5'- uGCGUCgGCCCuCGCGgcacgCuUCAGAGAgCGg -3'
miRNA:   3'- gCGCAG-CGGG-GCGUa----G-AGUUUUUgGC- -5'
14308 3' -53.8 NC_003521.1 + 123474 0.68 0.959681
Target:  5'- gGCGUCaGCUCCGUGUC-CGuc-GCCGg -3'
miRNA:   3'- gCGCAG-CGGGGCGUAGaGUuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 152775 0.68 0.959681
Target:  5'- gGCGUCGCCUccugcgccuugCGCAccgcCUCGGucACCGg -3'
miRNA:   3'- gCGCAGCGGG-----------GCGUa---GAGUUuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 176224 0.68 0.959681
Target:  5'- gCGUGUCGUCCCGCG-C-CA---GCCGc -3'
miRNA:   3'- -GCGCAGCGGGGCGUaGaGUuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 136004 0.68 0.959681
Target:  5'- cCGCGUCaCgCCCGUGUuCUCGGGGAUCa -3'
miRNA:   3'- -GCGCAGcG-GGGCGUA-GAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 240629 0.68 0.963098
Target:  5'- gCGUGUCGCUugCCGCGggcgugCagGGAGGCCGa -3'
miRNA:   3'- -GCGCAGCGG--GGCGUa-----GagUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 43279 0.68 0.963098
Target:  5'- aGC-UCGCCgCCGC-UCUCGuccGCCGa -3'
miRNA:   3'- gCGcAGCGG-GGCGuAGAGUuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 80 0.68 0.963098
Target:  5'- gCGUGUCGCUugCCGCGggcgugCagGGAGGCCGa -3'
miRNA:   3'- -GCGCAGCGG--GGCGUa-----GagUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 40402 0.68 0.963098
Target:  5'- gCGUGUCGCUugCCGCGggcgugCagGGAGGCCGa -3'
miRNA:   3'- -GCGCAGCGG--GGCGUa-----GagUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 28773 0.68 0.963098
Target:  5'- uGUGUcguuucucuaugCGCCCCGCGcccUCUCAu--GCCa -3'
miRNA:   3'- gCGCA------------GCGGGGCGU---AGAGUuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 17220 0.68 0.966307
Target:  5'- aGCGUCGCCgUCGCG-CgguauggCAAgcGAGCCGg -3'
miRNA:   3'- gCGCAGCGG-GGCGUaGa------GUU--UUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 217594 0.68 0.966307
Target:  5'- cCGgGUcCGCCCCggaccagcagggGCGUCUCGGccGCCa -3'
miRNA:   3'- -GCgCA-GCGGGG------------CGUAGAGUUuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 225576 0.68 0.966307
Target:  5'- cCGUGUCGUCCUGgCG-CUCGGcgGCCu -3'
miRNA:   3'- -GCGCAGCGGGGC-GUaGAGUUuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 104892 0.68 0.969314
Target:  5'- gGCGUCGCacauCCCGCGgccguggCcGAGGCCGg -3'
miRNA:   3'- gCGCAGCG----GGGCGUaga----GuUUUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.