Results 41 - 60 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 185693 | 0.67 | 0.982893 |
Target: 5'- cCGCGcCGCgaccuuauuugaggUCCGCGUCUCGccGGGugCGg -3' miRNA: 3'- -GCGCaGCG--------------GGGCGUAGAGU--UUUugGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 98084 | 0.67 | 0.981528 |
Target: 5'- cCGuCGUCGCCuUCGUA-CUCGAAgGACCa -3' miRNA: 3'- -GC-GCAGCGG-GGCGUaGAGUUU-UUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 169470 | 0.67 | 0.981528 |
Target: 5'- -uCGUCGCCaggCGCGUCgUCGuuGGCCa -3' miRNA: 3'- gcGCAGCGGg--GCGUAG-AGUuuUUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 122683 | 0.67 | 0.981124 |
Target: 5'- gGCGUCGCCggugaucauggGCGUCUCGgcGGGGCUGg -3' miRNA: 3'- gCGCAGCGGgg---------CGUAGAGU--UUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 171946 | 0.67 | 0.97944 |
Target: 5'- cCGC-UCGCCCCuCAUCacaagagguaCAGGAACCGu -3' miRNA: 3'- -GCGcAGCGGGGcGUAGa---------GUUUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 118018 | 0.67 | 0.97944 |
Target: 5'- gCGUGUCGCUgCCGCGggaCUCGGu-GCUGg -3' miRNA: 3'- -GCGCAGCGG-GGCGUa--GAGUUuuUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 108201 | 0.67 | 0.97944 |
Target: 5'- gGCGcCGCCgCCGaGUCU-GGAAGCCGu -3' miRNA: 3'- gCGCaGCGG-GGCgUAGAgUUUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 107633 | 0.67 | 0.97944 |
Target: 5'- cCGCgGUCGUCCCG-AUCgCcGAGGCCGc -3' miRNA: 3'- -GCG-CAGCGGGGCgUAGaGuUUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 45654 | 0.67 | 0.97944 |
Target: 5'- cCGCGggguccggCGCacaCCCGCua-UCAGGGGCCGg -3' miRNA: 3'- -GCGCa-------GCG---GGGCGuagAGUUUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 95125 | 0.67 | 0.97944 |
Target: 5'- aGCGUgGCCuugaagagcuCCGCGUCgugCGAGAGCa- -3' miRNA: 3'- gCGCAgCGG----------GGCGUAGa--GUUUUUGgc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 57415 | 0.67 | 0.97944 |
Target: 5'- uGCgGUCGCCCaC-CGUCUCGcgGACgGg -3' miRNA: 3'- gCG-CAGCGGG-GcGUAGAGUuuUUGgC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 166003 | 0.67 | 0.978106 |
Target: 5'- aCGcCGUCGCgcucggcgccguccgUCCGCGUCUCGccgcuACCGc -3' miRNA: 3'- -GC-GCAGCG---------------GGGCGUAGAGUuuu--UGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 150514 | 0.67 | 0.977181 |
Target: 5'- gGCGggGCCCUGCuaggagCGGGAGCCGu -3' miRNA: 3'- gCGCagCGGGGCGuaga--GUUUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 30234 | 0.67 | 0.977181 |
Target: 5'- gGCGUCGCgCUGCAggUCcgcgCGGuuGCCGu -3' miRNA: 3'- gCGCAGCGgGGCGU--AGa---GUUuuUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 20186 | 0.67 | 0.974745 |
Target: 5'- cCGCGUCGCgaCGuCAUCgUCGGGAACUc -3' miRNA: 3'- -GCGCAGCGggGC-GUAG-AGUUUUUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 100265 | 0.67 | 0.974745 |
Target: 5'- aGCuGUCGCCgCCGCcgCcgCAGcAGCCa -3' miRNA: 3'- gCG-CAGCGG-GGCGuaGa-GUUuUUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 149185 | 0.68 | 0.972125 |
Target: 5'- gCGCGUCGCCaCCgGCGgccaCGAGGACUa -3' miRNA: 3'- -GCGCAGCGG-GG-CGUaga-GUUUUUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 30868 | 0.68 | 0.972125 |
Target: 5'- gGCGUUGUugcucaguUCCGCGUC-CGAGAggGCCGa -3' miRNA: 3'- gCGCAGCG--------GGGCGUAGaGUUUU--UGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 182056 | 0.68 | 0.969314 |
Target: 5'- gCGCGcCGCCCUGCAguggCU---GGACCu -3' miRNA: 3'- -GCGCaGCGGGGCGUa---GAguuUUUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 139327 | 0.68 | 0.969314 |
Target: 5'- cCGCGUCugGCCgCCGCugCUCGAGcACCu -3' miRNA: 3'- -GCGCAG--CGG-GGCGuaGAGUUUuUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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