miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 3' -53.8 NC_003521.1 + 97463 0.71 0.881776
Target:  5'- uCGuCGUUGCCgCCGCuUCUCAcccgcGAGCCGc -3'
miRNA:   3'- -GC-GCAGCGG-GGCGuAGAGUu----UUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 98084 0.67 0.981528
Target:  5'- cCGuCGUCGCCuUCGUA-CUCGAAgGACCa -3'
miRNA:   3'- -GC-GCAGCGG-GGCGUaGAGUUU-UUGGc -5'
14308 3' -53.8 NC_003521.1 + 99730 0.66 0.990897
Target:  5'- gGCGUCGUCgCGCAcccagccgCUCAuuuGGCCc -3'
miRNA:   3'- gCGCAGCGGgGCGUa-------GAGUuu-UUGGc -5'
14308 3' -53.8 NC_003521.1 + 100265 0.67 0.974745
Target:  5'- aGCuGUCGCCgCCGCcgCcgCAGcAGCCa -3'
miRNA:   3'- gCG-CAGCGG-GGCGuaGa-GUUuUUGGc -5'
14308 3' -53.8 NC_003521.1 + 102442 0.76 0.650992
Target:  5'- aCGCGcCGCaggCCGCGgcagaUCUCGAAGACCGu -3'
miRNA:   3'- -GCGCaGCGg--GGCGU-----AGAGUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 104892 0.68 0.969314
Target:  5'- gGCGUCGCacauCCCGCGgccguggCcGAGGCCGg -3'
miRNA:   3'- gCGCAGCG----GGGCGUaga----GuUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 105573 0.66 0.986844
Target:  5'- gGCGUcCGCCgCCGUGUCgUCGccgccGCCGg -3'
miRNA:   3'- gCGCA-GCGG-GGCGUAG-AGUuuu--UGGC- -5'
14308 3' -53.8 NC_003521.1 + 107633 0.67 0.97944
Target:  5'- cCGCgGUCGUCCCG-AUCgCcGAGGCCGc -3'
miRNA:   3'- -GCG-CAGCGGGGCgUAGaGuUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 108201 0.67 0.97944
Target:  5'- gGCGcCGCCgCCGaGUCU-GGAAGCCGu -3'
miRNA:   3'- gCGCaGCGG-GGCgUAGAgUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 109725 0.74 0.748854
Target:  5'- cCGCGcCGCCCCGCcGUC-CGGAGcCCGc -3'
miRNA:   3'- -GCGCaGCGGGGCG-UAGaGUUUUuGGC- -5'
14308 3' -53.8 NC_003521.1 + 109758 0.7 0.913382
Target:  5'- cCGCGgucgcCGCCaCCGCGUC-CGAGGcccGCCGc -3'
miRNA:   3'- -GCGCa----GCGG-GGCGUAGaGUUUU---UGGC- -5'
14308 3' -53.8 NC_003521.1 + 114109 0.66 0.988325
Target:  5'- cCGCGcCGCCUCGgAUCUgCuc--ACCGg -3'
miRNA:   3'- -GCGCaGCGGGGCgUAGA-GuuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 115799 0.66 0.986844
Target:  5'- gCGCGUCaGCaguCCGCcgCUCAGGcGCgGg -3'
miRNA:   3'- -GCGCAG-CGg--GGCGuaGAGUUUuUGgC- -5'
14308 3' -53.8 NC_003521.1 + 116215 0.66 0.990897
Target:  5'- uCGcCGUCGCCgCCGCuucgucgucCUCGucGGCCa -3'
miRNA:   3'- -GC-GCAGCGG-GGCGua-------GAGUuuUUGGc -5'
14308 3' -53.8 NC_003521.1 + 117101 0.68 0.956053
Target:  5'- aGCGgacgaggcCGCCuCCGCcgCUCAGccGCCGc -3'
miRNA:   3'- gCGCa-------GCGG-GGCGuaGAGUUuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 118018 0.67 0.97944
Target:  5'- gCGUGUCGCUgCCGCGggaCUCGGu-GCUGg -3'
miRNA:   3'- -GCGCAGCGG-GGCGUa--GAGUUuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 118779 0.76 0.640993
Target:  5'- -aCGUCGCCCUGCAUCUCGcu-GCgGa -3'
miRNA:   3'- gcGCAGCGGGGCGUAGAGUuuuUGgC- -5'
14308 3' -53.8 NC_003521.1 + 119894 0.66 0.988325
Target:  5'- -uCGUCGCCCCGCGggu---GGGCCu -3'
miRNA:   3'- gcGCAGCGGGGCGUagaguuUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 121025 0.73 0.785735
Target:  5'- cCGUGUCGCCCCGCuggcgC-CGGAaggugGACCGc -3'
miRNA:   3'- -GCGCAGCGGGGCGua---GaGUUU-----UUGGC- -5'
14308 3' -53.8 NC_003521.1 + 122623 0.7 0.919032
Target:  5'- uGCGUCgGCUCgGCG-CUCAAcAGCCGc -3'
miRNA:   3'- gCGCAG-CGGGgCGUaGAGUUuUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.