miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 3' -53.8 NC_003521.1 + 40402 0.68 0.963098
Target:  5'- gCGUGUCGCUugCCGCGggcgugCagGGAGGCCGa -3'
miRNA:   3'- -GCGCAGCGG--GGCGUa-----GagUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 40501 0.68 0.956053
Target:  5'- gGCGcCGCagCGCAUCUCGAAcuCCu -3'
miRNA:   3'- gCGCaGCGggGCGUAGAGUUUuuGGc -5'
14308 3' -53.8 NC_003521.1 + 43279 0.68 0.963098
Target:  5'- aGC-UCGCCgCCGC-UCUCGuccGCCGa -3'
miRNA:   3'- gCGcAGCGG-GGCGuAGAGUuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 45654 0.67 0.97944
Target:  5'- cCGCGggguccggCGCacaCCCGCua-UCAGGGGCCGg -3'
miRNA:   3'- -GCGCa-------GCG---GGGCGuagAGUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 46080 0.7 0.924454
Target:  5'- uCGCGaCGCCCgGCGUCgCA--GACCu -3'
miRNA:   3'- -GCGCaGCGGGgCGUAGaGUuuUUGGc -5'
14308 3' -53.8 NC_003521.1 + 49305 0.66 0.986844
Target:  5'- gCGCGUcgagCGCCCCGgucgcauucgaCGUCUCuggGAAuGCCGu -3'
miRNA:   3'- -GCGCA----GCGGGGC-----------GUAGAG---UUUuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 52641 0.68 0.959681
Target:  5'- uGCGUCgGCCCuCGCGgcacgCuUCAGAGAgCGg -3'
miRNA:   3'- gCGCAG-CGGG-GCGUa----G-AGUUUUUgGC- -5'
14308 3' -53.8 NC_003521.1 + 57415 0.67 0.97944
Target:  5'- uGCgGUCGCCCaC-CGUCUCGcgGACgGg -3'
miRNA:   3'- gCG-CAGCGGG-GcGUAGAGUuuUUGgC- -5'
14308 3' -53.8 NC_003521.1 + 60875 0.68 0.956053
Target:  5'- gGUGUgGUgCCGCAguUCUCGGAGAUCu -3'
miRNA:   3'- gCGCAgCGgGGCGU--AGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 69962 0.66 0.990897
Target:  5'- cCGCGccCGcCCCCGCGg---AGAAGCCGa -3'
miRNA:   3'- -GCGCa-GC-GGGGCGUagagUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 70526 0.66 0.988325
Target:  5'- aCGUGacCGCCUCGCG-CUCGGccGGCCGa -3'
miRNA:   3'- -GCGCa-GCGGGGCGUaGAGUUu-UUGGC- -5'
14308 3' -53.8 NC_003521.1 + 72319 0.66 0.985223
Target:  5'- gGCGUCGCCguccuCCGCcuccGUCUC----GCCGc -3'
miRNA:   3'- gCGCAGCGG-----GGCG----UAGAGuuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 72556 0.66 0.989673
Target:  5'- uGuCGUCGUCUCGCGaccUCUCAGcgucGCCa -3'
miRNA:   3'- gC-GCAGCGGGGCGU---AGAGUUuu--UGGc -5'
14308 3' -53.8 NC_003521.1 + 72754 0.69 0.952209
Target:  5'- uGCaGcC-CCCCGCGUCUCGAGcACCc -3'
miRNA:   3'- gCG-CaGcGGGGCGUAGAGUUUuUGGc -5'
14308 3' -53.8 NC_003521.1 + 80277 0.67 0.983454
Target:  5'- aGUaUCGCgCCGCGUCUCugucuCCGc -3'
miRNA:   3'- gCGcAGCGgGGCGUAGAGuuuuuGGC- -5'
14308 3' -53.8 NC_003521.1 + 81726 0.71 0.901403
Target:  5'- aCGgaGUCGCCCCGC-UC-CAAAAagGCCa -3'
miRNA:   3'- -GCg-CAGCGGGGCGuAGaGUUUU--UGGc -5'
14308 3' -53.8 NC_003521.1 + 86147 0.75 0.690766
Target:  5'- aCGCGguagCGCUCCaGCGUCUCGcu-GCCGg -3'
miRNA:   3'- -GCGCa---GCGGGG-CGUAGAGUuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 86541 0.66 0.990177
Target:  5'- cCGUGcCGCCCCGC-UC-CAcgcgacugauggagcGGAACCa -3'
miRNA:   3'- -GCGCaGCGGGGCGuAGaGU---------------UUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 90537 0.65 0.991898
Target:  5'- uCGCGaUgGCCCCGCGaCagCAcccacgaGAGGCCGg -3'
miRNA:   3'- -GCGC-AgCGGGGCGUaGa-GU-------UUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 95125 0.67 0.97944
Target:  5'- aGCGUgGCCuugaagagcuCCGCGUCgugCGAGAGCa- -3'
miRNA:   3'- gCGCAgCGG----------GGCGUAGa--GUUUUUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.