Results 21 - 40 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 188757 | 0.69 | 0.948146 |
Target: 5'- aGUGUaccgGCCCCGCGUCaUCu---GCCGc -3' miRNA: 3'- gCGCAg---CGGGGCGUAG-AGuuuuUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 179376 | 0.69 | 0.945602 |
Target: 5'- aCGCGUCGCUCggcucaccucuugaGCGUCUUAAaguuauccAAACCGu -3' miRNA: 3'- -GCGCAGCGGGg-------------CGUAGAGUU--------UUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 144941 | 0.71 | 0.881776 |
Target: 5'- gCGCGUCGCCgCGCuggCUCGcgacgaAGGGCUGc -3' miRNA: 3'- -GCGCAGCGGgGCGua-GAGU------UUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 97463 | 0.71 | 0.881776 |
Target: 5'- uCGuCGUUGCCgCCGCuUCUCAcccgcGAGCCGc -3' miRNA: 3'- -GC-GCAGCGG-GGCGuAGAGUu----UUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 171593 | 0.73 | 0.820507 |
Target: 5'- --gGUCuCCCCGUcUCUCAGAGACCa -3' miRNA: 3'- gcgCAGcGGGGCGuAGAGUUUUUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 154423 | 0.73 | 0.794647 |
Target: 5'- gCGCGUC-CCCCGCGUCgacCGcuGGCCc -3' miRNA: 3'- -GCGCAGcGGGGCGUAGa--GUuuUUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 195862 | 0.75 | 0.690766 |
Target: 5'- gCGCuGUCGCCUCGC-UCUCGGGAcuGCCc -3' miRNA: 3'- -GCG-CAGCGGGGCGuAGAGUUUU--UGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 102442 | 0.76 | 0.650992 |
Target: 5'- aCGCGcCGCaggCCGCGgcagaUCUCGAAGACCGu -3' miRNA: 3'- -GCGCaGCGg--GGCGU-----AGAGUUUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 118779 | 0.76 | 0.640993 |
Target: 5'- -aCGUCGCCCUGCAUCUCGcu-GCgGa -3' miRNA: 3'- gcGCAGCGGGGCGUAGAGUuuuUGgC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 236380 | 0.78 | 0.561361 |
Target: 5'- cCGCaUCGCUCCGCAUgCUCGAGGACUc -3' miRNA: 3'- -GCGcAGCGGGGCGUA-GAGUUUUUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 135014 | 0.71 | 0.895079 |
Target: 5'- gGCGUCGCCCU---UCUCGguGAAGCUGu -3' miRNA: 3'- gCGCAGCGGGGcguAGAGU--UUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 81726 | 0.71 | 0.901403 |
Target: 5'- aCGgaGUCGCCCCGC-UC-CAAAAagGCCa -3' miRNA: 3'- -GCg-CAGCGGGGCGuAGaGUUUU--UGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 124467 | 0.69 | 0.94386 |
Target: 5'- aCGCGuUCGCCgCCGCG-CUCGcgGuCCGu -3' miRNA: 3'- -GCGC-AGCGG-GGCGUaGAGUuuUuGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 226345 | 0.69 | 0.934612 |
Target: 5'- gCGCG-CGCCCCGCGgguagCgccgCGGGAGCgGc -3' miRNA: 3'- -GCGCaGCGGGGCGUa----Ga---GUUUUUGgC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 29352 | 0.69 | 0.934612 |
Target: 5'- uGCGcugCGCCCUGCGcCUCAu-GGCCu -3' miRNA: 3'- gCGCa--GCGGGGCGUaGAGUuuUUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 139793 | 0.7 | 0.924454 |
Target: 5'- gGCGUCGCCCUcgGCGguggCGAAGccGCCGu -3' miRNA: 3'- gCGCAGCGGGG--CGUaga-GUUUU--UGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 46080 | 0.7 | 0.924454 |
Target: 5'- uCGCGaCGCCCgGCGUCgCA--GACCu -3' miRNA: 3'- -GCGCaGCGGGgCGUAGaGUuuUUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 122623 | 0.7 | 0.919032 |
Target: 5'- uGCGUCgGCUCgGCG-CUCAAcAGCCGc -3' miRNA: 3'- gCGCAG-CGGGgCGUaGAGUUuUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 202586 | 0.7 | 0.907505 |
Target: 5'- cCGCGucUCGCCCCGCccg-CcGAGGCCGc -3' miRNA: 3'- -GCGC--AGCGGGGCGuagaGuUUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 32253 | 0.7 | 0.907505 |
Target: 5'- aGCGUCagGCCCCGgAUgUCAuacuuGCCGu -3' miRNA: 3'- gCGCAG--CGGGGCgUAgAGUuuu--UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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