miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 3' -53.8 NC_003521.1 + 188757 0.69 0.948146
Target:  5'- aGUGUaccgGCCCCGCGUCaUCu---GCCGc -3'
miRNA:   3'- gCGCAg---CGGGGCGUAG-AGuuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 202586 0.7 0.907505
Target:  5'- cCGCGucUCGCCCCGCccg-CcGAGGCCGc -3'
miRNA:   3'- -GCGC--AGCGGGGCGuagaGuUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 122623 0.7 0.919032
Target:  5'- uGCGUCgGCUCgGCG-CUCAAcAGCCGc -3'
miRNA:   3'- gCGCAG-CGGGgCGUaGAGUUuUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 46080 0.7 0.924454
Target:  5'- uCGCGaCGCCCgGCGUCgCA--GACCu -3'
miRNA:   3'- -GCGCaGCGGGgCGUAGaGUuuUUGGc -5'
14308 3' -53.8 NC_003521.1 + 139793 0.7 0.924454
Target:  5'- gGCGUCGCCCUcgGCGguggCGAAGccGCCGu -3'
miRNA:   3'- gCGCAGCGGGG--CGUaga-GUUUU--UGGC- -5'
14308 3' -53.8 NC_003521.1 + 29352 0.69 0.934612
Target:  5'- uGCGcugCGCCCUGCGcCUCAu-GGCCu -3'
miRNA:   3'- gCGCa--GCGGGGCGUaGAGUuuUUGGc -5'
14308 3' -53.8 NC_003521.1 + 226345 0.69 0.934612
Target:  5'- gCGCG-CGCCCCGCGgguagCgccgCGGGAGCgGc -3'
miRNA:   3'- -GCGCaGCGGGGCGUa----Ga---GUUUUUGgC- -5'
14308 3' -53.8 NC_003521.1 + 124467 0.69 0.94386
Target:  5'- aCGCGuUCGCCgCCGCG-CUCGcgGuCCGu -3'
miRNA:   3'- -GCGC-AGCGG-GGCGUaGAGUuuUuGGC- -5'
14308 3' -53.8 NC_003521.1 + 179376 0.69 0.945602
Target:  5'- aCGCGUCGCUCggcucaccucuugaGCGUCUUAAaguuauccAAACCGu -3'
miRNA:   3'- -GCGCAGCGGGg-------------CGUAGAGUU--------UUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 32253 0.7 0.907505
Target:  5'- aGCGUCagGCCCCGgAUgUCAuacuuGCCGu -3'
miRNA:   3'- gCGCAG--CGGGGCgUAgAGUuuu--UGGC- -5'
14308 3' -53.8 NC_003521.1 + 81726 0.71 0.901403
Target:  5'- aCGgaGUCGCCCCGC-UC-CAAAAagGCCa -3'
miRNA:   3'- -GCg-CAGCGGGGCGuAGaGUUUU--UGGc -5'
14308 3' -53.8 NC_003521.1 + 135014 0.71 0.895079
Target:  5'- gGCGUCGCCCU---UCUCGguGAAGCUGu -3'
miRNA:   3'- gCGCAGCGGGGcguAGAGU--UUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 236380 0.78 0.561361
Target:  5'- cCGCaUCGCUCCGCAUgCUCGAGGACUc -3'
miRNA:   3'- -GCGcAGCGGGGCGUA-GAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 118779 0.76 0.640993
Target:  5'- -aCGUCGCCCUGCAUCUCGcu-GCgGa -3'
miRNA:   3'- gcGCAGCGGGGCGUAGAGUuuuUGgC- -5'
14308 3' -53.8 NC_003521.1 + 102442 0.76 0.650992
Target:  5'- aCGCGcCGCaggCCGCGgcagaUCUCGAAGACCGu -3'
miRNA:   3'- -GCGCaGCGg--GGCGU-----AGAGUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 195862 0.75 0.690766
Target:  5'- gCGCuGUCGCCUCGC-UCUCGGGAcuGCCc -3'
miRNA:   3'- -GCG-CAGCGGGGCGuAGAGUUUU--UGGc -5'
14308 3' -53.8 NC_003521.1 + 154423 0.73 0.794647
Target:  5'- gCGCGUC-CCCCGCGUCgacCGcuGGCCc -3'
miRNA:   3'- -GCGCAGcGGGGCGUAGa--GUuuUUGGc -5'
14308 3' -53.8 NC_003521.1 + 171593 0.73 0.820507
Target:  5'- --gGUCuCCCCGUcUCUCAGAGACCa -3'
miRNA:   3'- gcgCAGcGGGGCGuAGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 97463 0.71 0.881776
Target:  5'- uCGuCGUUGCCgCCGCuUCUCAcccgcGAGCCGc -3'
miRNA:   3'- -GC-GCAGCGG-GGCGuAGAGUu----UUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 144941 0.71 0.881776
Target:  5'- gCGCGUCGCCgCGCuggCUCGcgacgaAGGGCUGc -3'
miRNA:   3'- -GCGCAGCGGgGCGua-GAGU------UUUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.