miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 3' -53.8 NC_003521.1 + 193152 0.78 0.512901
Target:  5'- cCGUGUCGUCggcgcacaGCAUCUCAGGAGCCGg -3'
miRNA:   3'- -GCGCAGCGGgg------CGUAGAGUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 140131 0.68 0.956053
Target:  5'- cCGCGgcggCGCCuCCGCAUCagCAuc-ACCa -3'
miRNA:   3'- -GCGCa---GCGG-GGCGUAGa-GUuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 136004 0.68 0.959681
Target:  5'- cCGCGUCaCgCCCGUGUuCUCGGGGAUCa -3'
miRNA:   3'- -GCGCAGcG-GGGCGUA-GAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 90537 0.65 0.991898
Target:  5'- uCGCGaUgGCCCCGCGaCagCAcccacgaGAGGCCGg -3'
miRNA:   3'- -GCGC-AgCGGGGCGUaGa-GU-------UUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 121025 0.73 0.785735
Target:  5'- cCGUGUCGCCCCGCuggcgC-CGGAaggugGACCGc -3'
miRNA:   3'- -GCGCAGCGGGGCGua---GaGUUU-----UUGGC- -5'
14308 3' -53.8 NC_003521.1 + 12777 0.72 0.844896
Target:  5'- gCGCGUgCGCCCCGauuaccCUCAGAucuCCGa -3'
miRNA:   3'- -GCGCA-GCGGGGCgua---GAGUUUuu-GGC- -5'
14308 3' -53.8 NC_003521.1 + 32524 0.71 0.874804
Target:  5'- aGCGUCGagaucaagcaCCCCGUAUCUCucacgguuAGCCa -3'
miRNA:   3'- gCGCAGC----------GGGGCGUAGAGuuu-----UUGGc -5'
14308 3' -53.8 NC_003521.1 + 34647 0.71 0.881776
Target:  5'- uCGCGgcccuggcCGCCCUGCuccugggcuUCUCGGAGGCCu -3'
miRNA:   3'- -GCGCa-------GCGGGGCGu--------AGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 109758 0.7 0.913382
Target:  5'- cCGCGgucgcCGCCaCCGCGUC-CGAGGcccGCCGc -3'
miRNA:   3'- -GCGCa----GCGG-GGCGUAGaGUUUU---UGGC- -5'
14308 3' -53.8 NC_003521.1 + 212864 0.68 0.956053
Target:  5'- aGCGcCGCCUgGCGUUUCu---ACCGc -3'
miRNA:   3'- gCGCaGCGGGgCGUAGAGuuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 170611 0.69 0.93935
Target:  5'- uGCG-CGCCaaGCGcUUCGAGGGCCGa -3'
miRNA:   3'- gCGCaGCGGggCGUaGAGUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 190307 0.71 0.894435
Target:  5'- gCGCGUCauGUCCgGCGUCUUAAGAagauauauaagacACCGu -3'
miRNA:   3'- -GCGCAG--CGGGgCGUAGAGUUUU-------------UGGC- -5'
14308 3' -53.8 NC_003521.1 + 86147 0.75 0.690766
Target:  5'- aCGCGguagCGCUCCaGCGUCUCGcu-GCCGg -3'
miRNA:   3'- -GCGCa---GCGGGG-CGUAGAGUuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 2358 0.69 0.93935
Target:  5'- cCGCGUcucCGCCCCGCccg-CcGAGGCCGc -3'
miRNA:   3'- -GCGCA---GCGGGGCGuagaGuUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 146742 0.74 0.72883
Target:  5'- gCGCGUCGCCuCCGgGUgaCUCAGacacgccgcuuugGAACCGg -3'
miRNA:   3'- -GCGCAGCGG-GGCgUA--GAGUU-------------UUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 160362 0.71 0.888536
Target:  5'- gGCGUCGCCgCCuuc-CUCAAGAACCc -3'
miRNA:   3'- gCGCAGCGG-GGcguaGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 167313 0.68 0.956053
Target:  5'- gGCGUCGCcgaCCUGCuUCUCGAAGcAgCGg -3'
miRNA:   3'- gCGCAGCG---GGGCGuAGAGUUUU-UgGC- -5'
14308 3' -53.8 NC_003521.1 + 52641 0.68 0.959681
Target:  5'- uGCGUCgGCCCuCGCGgcacgCuUCAGAGAgCGg -3'
miRNA:   3'- gCGCAG-CGGG-GCGUa----G-AGUUUUUgGC- -5'
14308 3' -53.8 NC_003521.1 + 109725 0.74 0.748854
Target:  5'- cCGCGcCGCCCCGCcGUC-CGGAGcCCGc -3'
miRNA:   3'- -GCGCaGCGGGGCG-UAGaGUUUUuGGC- -5'
14308 3' -53.8 NC_003521.1 + 171015 0.72 0.852666
Target:  5'- uGUGUCGCCUcaagugcgagCGuCAUCUCGAcgGCCGc -3'
miRNA:   3'- gCGCAGCGGG----------GC-GUAGAGUUuuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.