Results 21 - 40 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 43279 | 0.68 | 0.963098 |
Target: 5'- aGC-UCGCCgCCGC-UCUCGuccGCCGa -3' miRNA: 3'- gCGcAGCGG-GGCGuAGAGUuuuUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 136004 | 0.68 | 0.959681 |
Target: 5'- cCGCGUCaCgCCCGUGUuCUCGGGGAUCa -3' miRNA: 3'- -GCGCAGcG-GGGCGUA-GAGUUUUUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 190307 | 0.71 | 0.894435 |
Target: 5'- gCGCGUCauGUCCgGCGUCUUAAGAagauauauaagacACCGu -3' miRNA: 3'- -GCGCAG--CGGGgCGUAGAGUUUU-------------UGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 109725 | 0.74 | 0.748854 |
Target: 5'- cCGCGcCGCCCCGCcGUC-CGGAGcCCGc -3' miRNA: 3'- -GCGCaGCGGGGCG-UAGaGUUUUuGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 122683 | 0.67 | 0.981124 |
Target: 5'- gGCGUCGCCggugaucauggGCGUCUCGgcGGGGCUGg -3' miRNA: 3'- gCGCAGCGGgg---------CGUAGAGU--UUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 20186 | 0.67 | 0.974745 |
Target: 5'- cCGCGUCGCgaCGuCAUCgUCGGGAACUc -3' miRNA: 3'- -GCGCAGCGggGC-GUAG-AGUUUUUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 140131 | 0.68 | 0.956053 |
Target: 5'- cCGCGgcggCGCCuCCGCAUCagCAuc-ACCa -3' miRNA: 3'- -GCGCa---GCGG-GGCGUAGa-GUuuuUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 146742 | 0.74 | 0.72883 |
Target: 5'- gCGCGUCGCCuCCGgGUgaCUCAGacacgccgcuuugGAACCGg -3' miRNA: 3'- -GCGCAGCGG-GGCgUA--GAGUU-------------UUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 139327 | 0.68 | 0.969314 |
Target: 5'- cCGCGUCugGCCgCCGCugCUCGAGcACCu -3' miRNA: 3'- -GCGCAG--CGG-GGCGuaGAGUUUuUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 86147 | 0.75 | 0.690766 |
Target: 5'- aCGCGguagCGCUCCaGCGUCUCGcu-GCCGg -3' miRNA: 3'- -GCGCa---GCGGGG-CGUAGAGUuuuUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 52641 | 0.68 | 0.959681 |
Target: 5'- uGCGUCgGCCCuCGCGgcacgCuUCAGAGAgCGg -3' miRNA: 3'- gCGCAG-CGGG-GCGUa----G-AGUUUUUgGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 40402 | 0.68 | 0.963098 |
Target: 5'- gCGUGUCGCUugCCGCGggcgugCagGGAGGCCGa -3' miRNA: 3'- -GCGCAGCGG--GGCGUa-----GagUUUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 2358 | 0.69 | 0.93935 |
Target: 5'- cCGCGUcucCGCCCCGCccg-CcGAGGCCGc -3' miRNA: 3'- -GCGCA---GCGGGGCGuagaGuUUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 109758 | 0.7 | 0.913382 |
Target: 5'- cCGCGgucgcCGCCaCCGCGUC-CGAGGcccGCCGc -3' miRNA: 3'- -GCGCa----GCGG-GGCGUAGaGUUUU---UGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 32524 | 0.71 | 0.874804 |
Target: 5'- aGCGUCGagaucaagcaCCCCGUAUCUCucacgguuAGCCa -3' miRNA: 3'- gCGCAGC----------GGGGCGUAGAGuuu-----UUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 121025 | 0.73 | 0.785735 |
Target: 5'- cCGUGUCGCCCCGCuggcgC-CGGAaggugGACCGc -3' miRNA: 3'- -GCGCAGCGGGGCGua---GaGUUU-----UUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 80277 | 0.67 | 0.983454 |
Target: 5'- aGUaUCGCgCCGCGUCUCugucuCCGc -3' miRNA: 3'- gCGcAGCGgGGCGUAGAGuuuuuGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 98084 | 0.67 | 0.981528 |
Target: 5'- cCGuCGUCGCCuUCGUA-CUCGAAgGACCa -3' miRNA: 3'- -GC-GCAGCGG-GGCGUaGAGUUU-UUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 108201 | 0.67 | 0.97944 |
Target: 5'- gGCGcCGCCgCCGaGUCU-GGAAGCCGu -3' miRNA: 3'- gCGCaGCGG-GGCgUAGAgUUUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 166003 | 0.67 | 0.978106 |
Target: 5'- aCGcCGUCGCgcucggcgccguccgUCCGCGUCUCGccgcuACCGc -3' miRNA: 3'- -GC-GCAGCG---------------GGGCGUAGAGUuuu--UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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